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Iodine in PDB 8ft6: The Von Willebrand Factor A Domain of Human Capillary Morphogenesis Gene II, Flexibly Fused to the 1TEL Crystallization Chaperone, Ala- Ala Linker Variant, Sumo Tag-Free Preparation.

Protein crystallography data

The structure of The Von Willebrand Factor A Domain of Human Capillary Morphogenesis Gene II, Flexibly Fused to the 1TEL Crystallization Chaperone, Ala- Ala Linker Variant, Sumo Tag-Free Preparation., PDB code: 8ft6 was solved by P.L.Gajjar, C.M.Litchfield, M.Callahan, N.Redd, T.Doukov, J.D.Moody, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.19 / 2.62
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 99.745, 99.745, 50.135, 90, 90, 120
R / Rfree (%) 20.5 / 23.4

Iodine Binding Sites:

The binding sites of Iodine atom in the The Von Willebrand Factor A Domain of Human Capillary Morphogenesis Gene II, Flexibly Fused to the 1TEL Crystallization Chaperone, Ala- Ala Linker Variant, Sumo Tag-Free Preparation. (pdb code 8ft6). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the The Von Willebrand Factor A Domain of Human Capillary Morphogenesis Gene II, Flexibly Fused to the 1TEL Crystallization Chaperone, Ala- Ala Linker Variant, Sumo Tag-Free Preparation., PDB code: 8ft6:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 8ft6

Go back to Iodine Binding Sites List in 8ft6
Iodine binding site 1 out of 2 in the The Von Willebrand Factor A Domain of Human Capillary Morphogenesis Gene II, Flexibly Fused to the 1TEL Crystallization Chaperone, Ala- Ala Linker Variant, Sumo Tag-Free Preparation.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of The Von Willebrand Factor A Domain of Human Capillary Morphogenesis Gene II, Flexibly Fused to the 1TEL Crystallization Chaperone, Ala- Ala Linker Variant, Sumo Tag-Free Preparation. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I302

b:81.4
occ:0.60
CE2 A:TYR69 2.4 78.8 1.0
CD2 A:TYR69 2.9 69.8 1.0
CZ A:TYR69 3.6 89.5 1.0
OH A:TYR69 4.0 97.4 1.0
CG A:TYR69 4.3 66.3 1.0
CE1 A:TYR69 4.8 91.2 1.0
CG A:ARG70 4.9 45.1 1.0

Iodine binding site 2 out of 2 in 8ft6

Go back to Iodine Binding Sites List in 8ft6
Iodine binding site 2 out of 2 in the The Von Willebrand Factor A Domain of Human Capillary Morphogenesis Gene II, Flexibly Fused to the 1TEL Crystallization Chaperone, Ala- Ala Linker Variant, Sumo Tag-Free Preparation.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of The Von Willebrand Factor A Domain of Human Capillary Morphogenesis Gene II, Flexibly Fused to the 1TEL Crystallization Chaperone, Ala- Ala Linker Variant, Sumo Tag-Free Preparation. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I303

b:60.0
occ:0.27
CE2 A:TYR208 2.5 58.6 1.0
CD2 A:TYR208 3.0 66.3 1.0
CZ A:TYR208 3.6 64.9 1.0
OH A:TYR208 4.0 87.0 1.0
CG2 A:VAL205 4.1 60.2 1.0
NE2 A:HIS171 4.4 55.5 1.0
CG A:TYR208 4.4 64.4 1.0
CE1 A:HIS171 4.5 59.0 1.0
N A:VAL205 4.7 60.1 1.0
O4 A:SO4304 4.7 66.8 0.7
CE1 A:TYR208 4.8 67.4 1.0
CA A:VAL205 5.0 64.9 1.0

Reference:

P.L.Gajjar, M.J.Pedroza Romo, C.M.Litchfield, M.Callahan, N.Redd, S.Nawarathnage, E.Wilson, J.Averett, S.Soleimani, C.Stewart, A.Lewis, T.Smith, S.Brown, Y.J.Tseng, T.Doukov, A.Lebedev, M.D.Moody. Decreasing the Flexibility of the Telsam-Target Protein Linker and Omitting the Cleavable Fusion Tag Improves Crystal Order and Diffraction Limits To Be Published.
Page generated: Mon Aug 12 02:44:13 2024

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