Iodine in PDB 8h3z: Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120

The structure of Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120, PDB code: 8h3z was solved by S.J.Han, Y.L.Jiang, C.Z.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.35
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	59.697, 69.41, 114.31, 90, 90, 90
R / Rfree (%)	20.4 / 24.3

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 25;

Binding sites:

The binding sites of Iodine atom in the Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120 (pdb code 8h3z). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 25 binding sites of Iodine where determined in the Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120, PDB code: 8h3z:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 25 in the Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120 within 5.0Å range: probe atom residue distance (Å) B Occ A:I301 b:28.6 occ:1.00 NH2 A:ARG184 3.7 19.1 1.0 O A:HOH431 3.7 20.9 1.0 N A:SER9 3.7 25.4 1.0 NH1 A:ARG184 3.8 23.1 1.0 CB A:SER9 3.8 25.3 1.0 OG A:SER9 4.1 27.3 1.0 N A:HIS8 4.1 23.1 1.0 CZ A:PHE106 4.1 27.6 1.0 CZ A:ARG184 4.1 21.2 1.0 CG A:PRO153 4.2 25.1 1.0 CA A:SER9 4.3 25.1 1.0 CB A:ALA156 4.4 24.6 1.0 CB A:HIS8 4.4 23.1 1.0 C A:HIS8 4.5 23.8 1.0 CA A:HIS8 4.5 22.9 1.0 CB A:ILE7 4.6 21.2 1.0 CE1 A:PHE106 4.6 28.6 1.0 CD A:PRO153 4.7 25.2 1.0 CD2 A:LEU136 4.7 17.0 1.0 C A:ILE7 4.8 22.3 1.0 CG A:MET112 4.9 25.3 1.0 I A:IOD302 4.9 48.3 1.0 CD1 A:ILE7 4.9 21.9 1.0

Iodine binding site 2 out of 25 in the Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120 within 5.0Å range: probe atom residue distance (Å) B Occ A:I302 b:48.3 occ:1.00 N A:GLY111 3.5 25.5 1.0 O A:HOH431 3.7 20.9 1.0 OG A:SER38 3.8 19.3 1.0 CG2 A:ILE7 3.8 21.4 1.0 N A:MET112 3.9 23.9 1.0 SD A:MET56 4.0 34.4 1.0 CD2 A:TYR110 4.0 23.4 1.0 N A:SER38 4.0 19.9 1.0 CA A:GLY111 4.1 25.6 1.0 CA A:TYR110 4.1 25.0 1.0 CB A:TYR110 4.1 24.6 1.0 C A:TYR110 4.2 24.6 1.0 NH2 A:ARG184 4.2 19.1 1.0 CB A:MET56 4.3 33.7 1.0 CB A:SER38 4.4 20.3 1.0 CG A:TYR110 4.5 24.0 1.0 CB A:ILE7 4.5 21.2 1.0 C A:GLY111 4.5 24.5 1.0 CA A:GLY37 4.6 19.4 1.0 CG A:MET112 4.6 25.3 1.0 CB A:MET112 4.8 24.1 1.0 CA A:SER38 4.8 21.2 1.0 C A:GLY37 4.8 19.3 1.0 CG A:MET56 4.8 35.6 1.0 I A:IOD301 4.9 28.6 1.0 CA A:MET112 4.9 23.6 1.0

Iodine binding site 3 out of 25 in the Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120 within 5.0Å range: probe atom residue distance (Å) B Occ A:I303 b:72.2 occ:1.00 N A:GLY37 3.4 19.5 1.0 O A:HOH405 3.5 23.5 1.0 OH A:TYR110 3.9 27.2 1.0 CB A:ARG40 4.0 37.1 1.0 CE1 A:TYR110 4.0 24.4 1.0 CA A:GLY37 4.1 19.4 1.0 CD A:ARG40 4.2 51.5 1.0 CZ A:TYR110 4.2 24.5 1.0 CA A:LEU36 4.3 23.0 1.0 C A:LEU36 4.3 21.3 1.0 CD2 A:LEU36 4.4 26.8 1.0 CB A:LEU36 4.5 26.0 1.0 O A:GLY37 4.6 20.9 1.0 CG A:ARG40 4.7 41.8 1.0 C A:GLY37 4.9 19.3 1.0 CD1 A:TYR110 4.9 23.4 1.0

Iodine binding site 4 out of 25 in the Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120 within 5.0Å range: probe atom residue distance (Å) B Occ A:I304 b:48.4 occ:1.00 O A:HOH437 3.4 58.8 1.0 NZ B:LYS107 3.6 44.2 1.0 CG2 A:THR34 4.1 27.9 1.0 OG1 A:THR34 4.1 26.5 1.0 CG1 A:VAL50 4.2 25.3 1.0 CG1 A:VAL44 4.2 38.1 1.0 CB A:THR34 4.2 26.5 1.0 CB A:VAL44 4.5 39.1 1.0 CD1 A:LEU36 4.5 27.1 1.0 CG2 A:VAL44 4.5 37.4 1.0 CB A:LEU49 4.8 37.6 1.0

Iodine binding site 5 out of 25 in the Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120 within 5.0Å range: probe atom residue distance (Å) B Occ A:I305 b:54.1 occ:1.00 N A:GLU75 3.8 26.2 1.0 C A:GLU75 3.8 25.8 1.0 CA A:GLU75 3.9 28.1 1.0 N A:PRO76 3.9 23.9 1.0 CG2 A:THR183 4.0 31.6 1.0 C A:ASP74 4.0 29.3 1.0 CD A:PRO76 4.1 22.6 1.0 CB A:ASP74 4.1 31.1 1.0 O A:ASP74 4.2 26.2 1.0 CB A:THR183 4.4 31.8 1.0 O A:GLU75 4.4 27.1 1.0 CA A:PRO76 4.7 22.6 1.0 CA A:ASP74 4.8 32.5 1.0 CG A:PRO76 4.9 22.4 1.0 CB A:PRO76 4.9 21.3 1.0

Iodine binding site 6 out of 25 in the Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120 within 5.0Å range: probe atom residue distance (Å) B Occ A:I306 b:61.5 occ:1.00 ND2 A:ASN58 3.5 36.3 1.0 NZ A:LYS46 3.9 65.2 1.0 O A:PHE60 4.1 36.0 1.0 CB A:PHE60 4.4 31.8 1.0 C A:PHE60 4.4 33.8 1.0 CG A:ASN58 4.5 37.4 1.0 OD1 A:ASN58 4.6 36.5 1.0 OG1 A:THR63 4.7 32.6 1.0 CA A:LEU61 4.7 42.0 1.0 O A:HOH416 4.7 38.2 1.0 CE A:LYS46 4.8 63.5 1.0 N A:LEU61 4.8 37.7 1.0 CD2 A:LEU61 4.9 47.0 1.0 CD1 A:LEU42 4.9 43.7 1.0

Iodine binding site 7 out of 25 in the Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120 within 5.0Å range: probe atom residue distance (Å) B Occ A:I307 b:58.7 occ:1.00 O A:HOH426 3.6 27.2 1.0 CD1 A:LEU148 3.8 32.0 1.0 CB B:GLN20 3.9 38.3 1.0 CA B:GLN20 3.9 37.1 1.0 N B:GLN20 4.1 34.6 1.0 CG A:LEU148 4.2 32.8 1.0 CG B:GLN20 4.3 41.2 1.0 CB A:GLU147 4.4 55.5 1.0 CG1 A:VAL142 4.5 29.1 1.0 CG A:GLU147 4.6 58.7 1.0 CB A:GLN145 4.6 53.0 1.0 C B:LEU19 4.7 31.7 1.0 O A:VAL142 4.8 21.8 1.0 CB B:LEU19 4.8 26.9 1.0 O B:PRO16 4.8 34.8 1.0 CG A:GLN145 4.9 51.6 1.0

Iodine binding site 8 out of 25 in the Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120 within 5.0Å range: probe atom residue distance (Å) B Occ A:I308 b:81.2 occ:1.00 CA A:SER96 3.9 52.6 1.0 CG A:LEU123 4.0 48.7 1.0 N A:SER96 4.1 54.1 1.0 CD2 A:LEU123 4.1 48.9 1.0 C A:TRP95 4.2 52.5 1.0 CG1 A:VAL99 4.2 39.7 1.0 O A:TRP95 4.3 56.3 1.0 CB A:TRP95 4.4 46.9 1.0 CB A:SER96 4.4 52.8 1.0 CG2 A:VAL99 4.5 37.5 1.0 O A:LEU123 4.9 48.8 1.0 CD1 A:LEU123 4.9 48.9 1.0 CA A:TRP95 4.9 48.5 1.0 CB A:LEU123 5.0 47.9 1.0

Iodine binding site 9 out of 25 in the Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120 within 5.0Å range: probe atom residue distance (Å) B Occ A:I309 b:74.4 occ:1.00 O A:HOH410 3.2 25.4 1.0 N A:VAL168 3.4 26.1 1.0 O A:HOH453 3.5 43.7 1.0 NH2 A:ARG169 3.9 29.6 1.0 O A:VAL168 3.9 28.0 1.0 CA A:ALA167 4.0 27.7 1.0 CB A:VAL168 4.2 26.9 1.0 C A:ALA167 4.2 26.6 1.0 CA A:VAL168 4.2 27.4 1.0 O A:ARG161 4.3 35.1 1.0 O A:LEU166 4.3 28.1 1.0 O A:HOH417 4.4 36.4 1.0 CA A:ARG161 4.4 30.1 1.0 CG2 A:VAL168 4.5 28.0 1.0 C A:VAL168 4.5 28.2 1.0 CB A:ALA167 4.8 27.1 1.0 C A:ARG161 4.8 30.8 1.0 CG A:ARG161 4.9 30.1 1.0 CB A:ARG161 4.9 27.3 1.0 N A:ALA167 5.0 27.4 1.0 C A:LEU166 5.0 27.9 1.0

Iodine binding site 10 out of 25 in the Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Crystal Structure of the Effector-Binding Domain of the Lysr-Type Trasncription Factor Ntcb From Anabaena Pcc 7120 within 5.0Å range: probe atom residue distance (Å) B Occ A:I310 b:99.2 occ:1.00 N A:ASP66 3.6 53.4 1.0 N A:ARG65 3.8 54.4 1.0 I A:IOD311 3.9 94.1 1.0 CB A:ASP66 4.1 54.2 1.0 SD A:MET67 4.2 50.4 1.0 C A:GLY64 4.2 52.4 1.0 CA A:GLY64 4.2 47.3 1.0 CG2 A:THR191 4.3 24.5 1.0 CA A:ASP66 4.3 54.3 1.0 CG A:MET67 4.3 45.5 1.0 C A:ARG65 4.6 58.2 1.0 CA A:ARG65 4.6 61.4 1.0 C A:ASP66 4.8 48.6 1.0 N A:MET67 4.9 44.0 1.0 CB A:ARG65 4.9 67.7 1.0 O A:GLY64 4.9 50.9 1.0

S.J.Han, Y.L.Jiang, L.L.You, L.Q.Shen, X.X.Wu, F.Yang, N.Cui, W.W.Kong, H.Sun, K.Zhou, H.C.Meng, Z.P.Chen, Y.Chen, Y.Zhang, C.Z.Zhou. Dna Looping Mediates Cooperative Transcription Activation To Be Published.