Atomistry » Iodine » PDB 8fhs-8ur2 » 8h5l
Atomistry »
  Iodine »
    PDB 8fhs-8ur2 »
      8h5l »

Iodine in PDB 8h5l: Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis

Enzymatic activity of Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis

All present enzymatic activity of Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis:
3.1.1.101;

Protein crystallography data

The structure of Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis, PDB code: 8h5l was solved by S.H.Lee, H.Seo, K.-J.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.97 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 100.168, 51.546, 100.37, 90, 119.09, 90
R / Rfree (%) 15.5 / 18.5

Other elements in 8h5l:

The structure of Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis also contains other interesting chemical elements:

Potassium (K) 3 atoms

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis (pdb code 8h5l). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 8 binding sites of Iodine where determined in the Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis, PDB code: 8h5l:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iodine binding site 1 out of 8 in 8h5l

Go back to Iodine Binding Sites List in 8h5l
Iodine binding site 1 out of 8 in the Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I1203

b:40.1
occ:1.00
 O A:HOH1449 3.6 33.1 1.0
CA A:TRP96 3.9 7.9 1.0
CE A:LYS95 4.1 20.8 1.0
N A:TRP96 4.2 7.9 1.0
CG A:LYS95 4.3 14.3 1.0
CB A:TRP96 4.3 8.3 1.0
CD A:LYS95 4.3 17.3 1.0
O A:HOH1496 4.4 42.2 1.0
O A:HOH1335 4.4 34.4 1.0
C A:LYS95 4.5 8.7 1.0
O A:LYS95 4.5 9.7 1.0
O A:HOH1381 4.5 12.9 1.0
CG2 A:THR242 4.7 8.9 1.0
CG A:PRO99 4.7 11.0 1.0
O A:HOH1471 4.7 18.7 1.0
O A:HOH1652 4.7 33.7 1.0
CD A:PRO99 4.9 10.0 1.0
O A:HOH1658 5.0 25.0 1.0
CB A:LYS95 5.0 12.1 1.0

Iodine binding site 2 out of 8 in 8h5l

Go back to Iodine Binding Sites List in 8h5l
Iodine binding site 2 out of 8 in the Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I1204

b:30.1
occ:1.00
 O A:HOH1519 3.1 24.5 1.0
K A:K1201 3.2 24.8 1.0
N A:SER58 3.6 13.6 0.5
N A:SER58 3.6 12.4 0.5
OG A:SER58 3.9 21.6 0.5
CE2 A:PHE55 4.1 10.7 1.0
CA A:VAL57 4.1 10.9 1.0
CB A:SER58 4.1 17.6 0.5
CD2 A:LEU137 4.2 13.2 1.0
O A:THR56 4.3 11.5 1.0
CD2 A:PHE55 4.3 10.4 1.0
CB A:SER58 4.4 14.3 0.5
C A:VAL57 4.4 11.8 1.0
CD1 A:LEU137 4.4 11.7 1.0
O A:HOH1363 4.4 35.0 1.0
CA A:SER58 4.5 15.6 0.5
O A:HOH1585 4.5 32.6 1.0
CG1 A:VAL57 4.6 11.3 1.0
CA A:SER58 4.6 13.5 0.5
CB A:VAL57 4.8 11.4 1.0
O A:HOH1654 4.9 30.4 1.0

Iodine binding site 3 out of 8 in 8h5l

Go back to Iodine Binding Sites List in 8h5l
Iodine binding site 3 out of 8 in the Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I1205

b:22.9
occ:1.00
 OG A:SER92 2.7 12.6 0.5
O A:HOH1664 3.2 33.5 1.0
N A:ARG90 3.6 7.5 1.0
N A:SER93 4.0 8.0 1.0
CB A:SER92 4.0 10.3 0.5
CB A:SER93 4.1 8.0 1.0
O A:ARG90 4.1 6.4 1.0
CB A:ARG90 4.2 9.7 1.0
CA A:ALA89 4.3 7.6 1.0
CB A:ALA89 4.3 7.9 1.0
CA A:ARG90 4.3 8.3 1.0
CB A:SER92 4.4 8.0 0.5
C A:ARG90 4.4 7.2 1.0
C A:ALA89 4.4 7.9 1.0
CA A:SER93 4.4 8.0 1.0
OG A:SER93 4.6 7.1 1.0
C A:SER92 4.7 8.3 0.5
C A:SER92 4.7 7.7 0.5
O A:HOH1478 4.7 30.2 1.0
CA A:SER92 4.7 9.2 0.5
N A:SER92 4.8 8.5 0.5
N A:SER92 4.8 7.8 0.5
CA A:SER92 4.8 7.9 0.5
O A:HOH1583 4.9 25.4 1.0
CG A:ARG90 5.0 13.4 1.0
OG A:SER92 5.0 8.0 0.5

Iodine binding site 4 out of 8 in 8h5l

Go back to Iodine Binding Sites List in 8h5l
Iodine binding site 4 out of 8 in the Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I1201

b:32.2
occ:1.00
 O B:HOH1483 3.3 21.1 1.0
N B:SER58 3.6 14.5 0.5
N B:SER58 3.6 14.3 0.5
O B:HOH1638 4.0 36.3 1.0
CB B:SER58 4.1 16.4 0.5
CE2 B:PHE55 4.1 13.0 1.0
CA B:VAL57 4.1 13.1 1.0
OG B:SER58 4.2 16.7 0.5
CB B:SER58 4.2 16.4 0.5
CD2 B:LEU137 4.3 14.0 1.0
O B:THR56 4.3 12.8 1.0
CD2 B:PHE55 4.3 11.9 1.0
C B:VAL57 4.4 13.2 1.0
CA B:SER58 4.4 15.5 0.5
CG1 B:VAL57 4.5 14.0 1.0
CA B:SER58 4.5 15.1 0.5
CD1 B:LEU137 4.5 13.3 1.0
O B:HOH1625 4.8 32.5 1.0
CB B:VAL57 4.8 13.6 1.0

Iodine binding site 5 out of 8 in 8h5l

Go back to Iodine Binding Sites List in 8h5l
Iodine binding site 5 out of 8 in the Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I1202

b:42.7
occ:1.00
 O B:HOH1457 3.7 30.4 1.0
CA B:TRP96 3.9 10.2 1.0
O B:HOH1436 4.2 33.2 1.0
CG B:LYS95 4.2 17.3 1.0
N B:TRP96 4.3 10.6 1.0
CE B:LYS95 4.3 24.2 1.0
CB B:TRP96 4.3 11.2 1.0
CD B:LYS95 4.3 21.4 1.0
O B:HOH1373 4.5 16.2 1.0
C B:LYS95 4.5 11.7 1.0
O B:LYS95 4.5 9.9 1.0
O B:HOH1395 4.6 42.8 1.0
OG1 B:THR242 4.6 11.1 0.5
O B:HOH1499 4.7 24.4 1.0
CG B:PRO99 4.7 13.2 1.0
O B:HOH1634 4.8 30.9 1.0
NZ B:LYS95 4.9 26.8 1.0
CD B:PRO99 4.9 12.1 1.0
O B:HOH1594 5.0 33.4 1.0

Iodine binding site 6 out of 8 in 8h5l

Go back to Iodine Binding Sites List in 8h5l
Iodine binding site 6 out of 8 in the Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I1203

b:26.1
occ:1.00
 OG B:SER92 2.7 14.5 0.5
O B:HOH1626 3.5 36.0 1.0
N B:ARG90 3.5 10.2 1.0
O B:HOH1456 3.8 40.4 1.0
N B:SER93 3.9 10.1 1.0
O B:HOH1554 4.0 40.3 1.0
CB B:SER93 4.0 10.6 1.0
CB B:SER92 4.1 12.7 0.5
O B:ARG90 4.1 9.1 1.0
CB B:ARG90 4.2 11.8 1.0
CB B:ALA89 4.2 8.5 1.0
CA B:ALA89 4.2 8.7 1.0
CA B:ARG90 4.3 10.4 1.0
CB B:SER92 4.4 11.2 0.5
C B:ARG90 4.4 10.4 1.0
C B:ALA89 4.4 9.0 1.0
CA B:SER93 4.4 10.5 1.0
OG B:SER93 4.6 10.5 1.0
C B:SER92 4.7 10.9 0.5
C B:SER92 4.7 10.3 0.5
CA B:SER92 4.7 11.2 0.5
N B:SER92 4.8 10.6 0.5
N B:SER92 4.8 10.0 0.5
CA B:SER92 4.8 10.2 0.5
O B:HOH1550 4.9 29.0 1.0
CG B:ARG90 5.0 16.6 1.0
OG B:SER92 5.0 10.9 0.5

Iodine binding site 7 out of 8 in 8h5l

Go back to Iodine Binding Sites List in 8h5l
Iodine binding site 7 out of 8 in the Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I1204

b:25.1
occ:1.00
 OG B:SER207 3.4 17.9 0.5
N B:SER207 3.6 14.3 0.5
N B:SER207 3.6 13.8 0.5
N B:HIS237 3.8 15.0 1.0
O B:HOH1309 3.9 38.1 1.0
CB B:HIS237 4.0 11.7 1.0
O B:HOH1545 4.1 37.7 1.0
CB B:SER207 4.1 15.1 0.5
O B:ASN205 4.2 20.6 1.0
CB B:SER236 4.2 19.8 1.0
CA B:ASP206 4.2 16.4 1.0
CB B:SER207 4.2 16.6 0.5
O B:HOH1431 4.3 31.5 1.0
CA B:SER207 4.4 15.2 0.5
CA B:SER207 4.4 14.4 0.5
C B:ASP206 4.4 13.3 1.0
CA B:SER236 4.4 18.0 1.0
OD1 B:ASP206 4.4 13.8 1.0
CA B:HIS237 4.5 13.3 1.0
OG B:SER207 4.5 15.6 0.5
N B:ILE208 4.6 13.3 1.0
C B:SER236 4.6 14.6 1.0
CG1 B:ILE208 4.7 15.8 1.0
CD1 B:ILE208 4.7 16.0 1.0
C B:SER207 4.9 14.2 0.5
C B:SER207 5.0 13.8 0.5

Iodine binding site 8 out of 8 in 8h5l

Go back to Iodine Binding Sites List in 8h5l
Iodine binding site 8 out of 8 in the Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Crystal Structure of Petase N37D/S121E/R132E/A171C/A180V/P181V/D186H/S193C/A202C/V211C/S214Y/R224 E/N233C/S242T/N246D/N275C/S282C/F284C Mutant From Ideonella Sakaiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
E:I1502

b:54.3
occ:1.00
 O E:HOH1714 3.6 32.6 1.0
CA E:TRP96 3.9 13.3 1.0
CG E:LYS95 4.2 23.1 1.0
N E:TRP96 4.2 14.5 1.0
CD E:LYS95 4.3 25.2 1.0
CE E:LYS95 4.3 31.9 1.0
CB E:TRP96 4.4 13.8 1.0
C E:LYS95 4.5 16.1 1.0
O E:LYS95 4.5 14.3 1.0
O E:HOH1689 4.6 17.8 1.0
OG1 E:THR242 4.7 12.1 0.5
CG E:PRO99 4.7 15.8 1.0
O E:HOH1703 4.7 22.8 1.0
O E:HOH1884 4.8 29.8 1.0
NZ E:LYS95 4.9 35.4 1.0
CB E:LYS95 5.0 19.7 1.0

Reference:

S.H.Lee, H.Seo, K.J.Kim. A Case of Balance Engineering Exhibits Kinetic Relationship Between Mesophilic and Thermophilic Poly(Ethylene Terephthalate) Depolymerases. To Be Published.
Page generated: Thu Dec 28 06:39:20 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy