Iodine in PDB 8ikb: Cryo-Em Structure of HNRAC1-2I Fibril.

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iodine atom in the Cryo-Em Structure of HNRAC1-2I Fibril. (pdb code 8ikb). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 28 binding sites of Iodine where determined in the Cryo-Em Structure of HNRAC1-2I Fibril., PDB code: 8ikb:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 28 in the Cryo-Em Structure of HNRAC1-2I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Cryo-Em Structure of HNRAC1-2I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ D:I216 b:59.1 occ:1.00 I D:PHI216 0.0 59.1 1.0 CZ D:PHI216 2.0 59.1 1.0 CE1 D:PHI216 2.9 59.1 1.0 CE2 D:PHI216 3.0 59.1 1.0 CA J:GLY223 4.0 42.2 1.0 C J:GLY223 4.1 42.2 1.0 CD1 D:PHI216 4.3 59.1 1.0 CD2 D:PHI216 4.3 59.1 1.0 O J:GLY223 4.7 42.2 1.0 CE1 E:PHI216 4.7 75.3 1.0 CG D:PHI216 4.8 59.1 1.0 CA D:GLY218 4.9 52.5 1.0

Iodine binding site 2 out of 28 in the Cryo-Em Structure of HNRAC1-2I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Cryo-Em Structure of HNRAC1-2I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ E:I216 b:75.3 occ:1.00 I E:PHI216 0.0 75.3 1.0 CZ E:PHI216 2.1 75.3 1.0 CE1 I:PHI216 2.9 88.0 1.0 CE1 E:PHI216 3.0 75.3 1.0 CE2 E:PHI216 3.0 75.3 1.0 CZ I:PHI216 3.4 88.0 1.0 CD1 I:PHI216 3.6 88.0 1.0 I I:PHI216 3.9 88.0 1.0 CD1 E:PHI216 4.3 75.3 1.0 CD2 E:PHI216 4.3 75.3 1.0 CE2 I:PHI216 4.4 88.0 1.0 CG I:PHI216 4.6 88.0 1.0 CG E:PHI216 4.9 75.3 1.0 CD2 I:PHI216 4.9 88.0 1.0 CA E:GLY218 4.9 72.4 1.0

Iodine binding site 3 out of 28 in the Cryo-Em Structure of HNRAC1-2I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Cryo-Em Structure of HNRAC1-2I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ F:I216 b:58.6 occ:1.00 I F:PHI216 0.0 58.6 1.0 CZ F:PHI216 2.1 58.6 1.0 CE1 F:PHI216 3.0 58.6 1.0 CE2 F:PHI216 3.0 58.6 1.0 CE2 J:PHI216 3.2 52.4 1.0 CZ J:PHI216 3.3 52.4 1.0 I J:PHI216 3.6 52.4 1.0 CD2 J:PHI216 3.9 52.4 1.0 CE1 J:PHI216 4.1 52.4 1.0 CD2 F:PHI216 4.3 58.6 1.0 CD1 F:PHI216 4.3 58.6 1.0 CE1 M:PHE222 4.5 56.4 1.0 CG J:PHI216 4.6 52.4 1.0 CD1 J:PHI216 4.6 52.4 1.0 CD1 M:PHE222 4.7 56.4 1.0 CA F:GLY218 4.8 55.4 1.0 CG F:PHI216 4.9 58.6 1.0

Iodine binding site 4 out of 28 in the Cryo-Em Structure of HNRAC1-2I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Cryo-Em Structure of HNRAC1-2I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ I:I216 b:88.0 occ:1.00 I I:PHI216 0.0 88.0 1.0 CZ I:PHI216 2.1 88.0 1.0 CE1 I:PHI216 3.0 88.0 1.0 CE2 I:PHI216 3.0 88.0 1.0 I E:PHI216 3.9 75.3 1.0 CZ I:PHE222 4.1 77.9 1.0 CD1 I:PHI216 4.3 88.0 1.0 CD2 I:PHI216 4.3 88.0 1.0 CD2 D:PHI216 4.4 59.1 1.0 OD2 I:ASP220 4.5 84.7 1.0 CE1 I:PHE222 4.5 77.9 1.0 CE2 D:PHI216 4.8 59.1 1.0 CG I:PHI216 4.9 88.0 1.0 CG D:PHI216 4.9 59.1 1.0

Iodine binding site 5 out of 28 in the Cryo-Em Structure of HNRAC1-2I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Cryo-Em Structure of HNRAC1-2I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ J:I216 b:52.4 occ:1.00 I J:PHI216 0.0 52.4 1.0 CZ J:PHI216 2.1 52.4 1.0 CE1 J:PHI216 3.0 52.4 1.0 CE2 J:PHI216 3.0 52.4 1.0 I M:PHI216 3.1 60.0 1.0 I F:PHI216 3.6 58.6 1.0 CD1 i:PHE222 4.3 54.3 1.0 CD1 J:PHI216 4.3 52.4 1.0 CD2 J:PHI216 4.3 52.4 1.0 CE1 i:PHE222 4.4 54.3 1.0 CZ M:PHI216 4.9 60.0 1.0 CG i:PHE222 4.9 54.3 1.0 CG J:PHI216 4.9 52.4 1.0

Iodine binding site 6 out of 28 in the Cryo-Em Structure of HNRAC1-2I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Cryo-Em Structure of HNRAC1-2I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ L:I216 b:75.8 occ:1.00 I L:PHI216 0.0 75.8 1.0 CZ L:PHI216 2.1 75.8 1.0 CE2 L:PHI216 3.0 75.8 1.0 CE1 L:PHI216 3.0 75.8 1.0 CE1 E:PHE222 3.5 65.4 1.0 CD1 E:PHE222 3.5 65.4 1.0 CZ E:PHE222 4.2 65.4 1.0 CG E:PHE222 4.3 65.4 1.0 CZ L:PHE222 4.3 61.6 1.0 CD2 L:PHI216 4.3 75.8 1.0 CD1 L:PHI216 4.3 75.8 1.0 CE2 E:PHE222 4.8 65.4 1.0 CD2 E:PHE222 4.8 65.4 1.0 CG L:PHI216 4.9 75.8 1.0 CE1 L:PHE222 4.9 61.6 1.0 CB E:PHE222 5.0 65.4 1.0 OD2 L:ASP220 5.0 62.1 1.0

Iodine binding site 7 out of 28 in the Cryo-Em Structure of HNRAC1-2I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Cryo-Em Structure of HNRAC1-2I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ M:I216 b:60.0 occ:1.00 I M:PHI216 0.0 60.0 1.0 CZ M:PHI216 2.1 60.0 1.0 CE1 M:PHI216 3.0 60.0 1.0 CE2 M:PHI216 3.0 60.0 1.0 I J:PHI216 3.1 52.4 1.0 CB i:PHE222 3.7 54.3 1.0 CG i:PHE222 4.0 54.3 1.0 CD1 i:PHE222 4.3 54.3 1.0 CD1 M:PHI216 4.3 60.0 1.0 CZ J:PHI216 4.3 52.4 1.0 CD2 M:PHI216 4.3 60.0 1.0 CE1 J:PHI216 4.4 52.4 1.0 CD2 i:PHE222 4.6 54.3 1.0 CG M:PHI216 4.9 60.0 1.0 CZ M:PHE222 5.0 56.4 1.0

Iodine binding site 8 out of 28 in the Cryo-Em Structure of HNRAC1-2I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Cryo-Em Structure of HNRAC1-2I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ P:I216 b:61.0 occ:1.00 I P:PHI216 0.0 61.0 1.0 CZ P:PHI216 2.1 61.0 1.0 CE1 P:PHI216 3.0 61.0 1.0 CE2 P:PHI216 3.0 61.0 1.0 I 0:PHI216 4.0 52.1 1.0 CD1 P:PHI216 4.3 61.0 1.0 CD2 P:PHI216 4.3 61.0 1.0 CG P:PHI216 4.9 61.0 1.0

Iodine binding site 9 out of 28 in the Cryo-Em Structure of HNRAC1-2I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Cryo-Em Structure of HNRAC1-2I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ S:I216 b:69.6 occ:1.00 I S:PHI216 0.0 69.6 1.0 CZ S:PHI216 2.1 69.6 1.0 CE1 S:PHI216 3.0 69.6 1.0 CE2 S:PHI216 3.0 69.6 1.0 CE2 W:PHI216 3.6 87.0 1.0 CD2 W:PHI216 3.9 87.0 1.0 CZ W:PHI216 4.0 87.0 1.0 I t:PHI216 4.2 61.2 1.0 CD2 S:PHI216 4.3 69.6 1.0 CD1 S:PHI216 4.3 69.6 1.0 CG W:PHI216 4.4 87.0 1.0 CE1 W:PHI216 4.6 87.0 1.0 O S:GLY217 4.8 69.5 1.0 CD1 W:PHI216 4.8 87.0 1.0 I W:PHI216 4.8 87.0 1.0 CG S:PHI216 4.9 69.6 1.0 CA S:GLY218 4.9 70.8 1.0

Iodine binding site 10 out of 28 in the Cryo-Em Structure of HNRAC1-2I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Cryo-Em Structure of HNRAC1-2I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ T:I216 b:76.8 occ:1.00 I T:PHI216 0.0 76.8 1.0 CZ T:PHI216 2.1 76.8 1.0 CE2 X:PHI216 2.7 68.3 1.0 CE1 T:PHI216 3.0 76.8 1.0 CE2 T:PHI216 3.0 76.8 1.0 CD2 X:PHI216 3.2 68.3 1.0 CZ X:PHI216 3.4 68.3 1.0 CA T:GLY218 3.9 70.8 1.0 I X:PHI216 4.1 68.3 1.0 CG X:PHI216 4.2 68.3 1.0 CE1 X:PHI216 4.3 68.3 1.0 CD1 T:PHI216 4.3 76.8 1.0 CD2 T:PHI216 4.3 76.8 1.0 O T:GLY217 4.5 72.8 1.0 CD1 X:PHI216 4.6 68.3 1.0 O T:GLY218 4.6 70.8 1.0 C T:GLY218 4.8 70.8 1.0 CG T:PHI216 4.9 76.8 1.0 N T:GLY218 4.9 70.8 1.0

D.N.Li, Y.Y.Ma, D.Li, B.Dai, C.Liu. Cryo-Em Structure of HNRAC1-2I Fibril. To Be Published.