Iodine in PDB 8ikp: Cryo-Em Structure of HNRAC1-8I Fibril

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 32;

Binding sites:

The binding sites of Iodine atom in the Cryo-Em Structure of HNRAC1-8I Fibril (pdb code 8ikp). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 32 binding sites of Iodine where determined in the Cryo-Em Structure of HNRAC1-8I Fibril, PDB code: 8ikp:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 32 in the Cryo-Em Structure of HNRAC1-8I Fibril


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Cryo-Em Structure of HNRAC1-8I Fibril within 5.0Å range: probe atom residue distance (Å) B Occ c:I216 b:47.7 occ:1.00 I c:PHI216 0.0 47.7 1.0 CZ c:PHI216 2.0 47.7 1.0 CE2 c:PHI216 3.0 47.7 1.0 CE1 c:PHI216 3.0 47.7 1.0 OD2 c:ASP214 3.2 46.8 1.0 CD1 c:PHE210 3.6 45.8 1.0 CE1 c:PHE210 3.6 45.8 1.0 CG c:ASP214 3.9 46.8 1.0 CG c:PHE210 4.0 45.8 1.0 CZ c:PHE210 4.0 45.8 1.0 CD2 G:PHI216 4.1 46.1 1.0 CD2 c:PHI216 4.3 47.7 1.0 CB G:PHI216 4.3 46.1 1.0 CD1 c:PHI216 4.3 47.7 1.0 CD2 c:PHE210 4.3 45.8 1.0 CE2 c:PHE210 4.3 45.8 1.0 CG G:PHI216 4.4 46.1 1.0 CB c:ASP214 4.5 46.8 1.0 OD1 c:ASP214 4.7 46.8 1.0 CB c:PHE210 4.7 45.8 1.0 CG c:PHI216 4.8 47.7 1.0 CE2 G:PHI216 4.8 46.1 1.0

Iodine binding site 2 out of 32 in the Cryo-Em Structure of HNRAC1-8I Fibril


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Cryo-Em Structure of HNRAC1-8I Fibril within 5.0Å range: probe atom residue distance (Å) B Occ A:I216 b:45.7 occ:1.00 I A:PHI216 0.0 45.7 1.0 CZ A:PHI216 2.0 45.7 1.0 CE1 A:PHI216 3.0 45.7 1.0 CE2 A:PHI216 3.0 45.7 1.0 OD2 A:ASP214 3.3 43.0 1.0 CE1 A:PHE210 3.7 43.1 1.0 CZ A:PHE210 3.7 43.1 1.0 CD1 A:PHE210 3.8 43.1 1.0 CE2 A:PHE210 3.9 43.1 1.0 CG A:PHE210 4.0 43.1 1.0 CD2 A:PHE210 4.0 43.1 1.0 CG A:ASP214 4.1 43.0 1.0 CD1 A:PHI216 4.3 45.7 1.0 CD2 A:PHI216 4.3 45.7 1.0 CB A:ASP214 4.7 43.0 1.0 CD2 B:PHI216 4.7 51.5 1.0 CE2 B:PHI216 4.8 51.5 1.0 CG A:PHI216 4.8 45.7 1.0 CB A:PHE210 4.8 43.1 1.0 OD1 A:ASP214 5.0 43.0 1.0

Iodine binding site 3 out of 32 in the Cryo-Em Structure of HNRAC1-8I Fibril


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Cryo-Em Structure of HNRAC1-8I Fibril within 5.0Å range: probe atom residue distance (Å) B Occ B:I216 b:51.5 occ:1.00 I B:PHI216 0.0 51.5 1.0 CZ B:PHI216 2.0 51.5 1.0 CE2 B:PHI216 3.0 51.5 1.0 CE1 B:PHI216 3.0 51.5 1.0 CD1 B:PHE210 3.6 47.8 1.0 CE1 B:PHE210 3.7 47.8 1.0 CD2 A:PHI216 3.8 45.7 1.0 CG B:PHE210 4.1 47.8 1.0 OD2 B:ASP214 4.2 53.5 1.0 CZ B:PHE210 4.3 47.8 1.0 CD2 B:PHI216 4.3 51.5 1.0 CG A:PHI216 4.3 45.7 1.0 CB A:PHI216 4.3 45.7 1.0 CD1 B:PHI216 4.3 51.5 1.0 CE2 A:PHI216 4.5 45.7 1.0 CD2 B:PHE210 4.7 47.8 1.0 CE2 B:PHE210 4.7 47.8 1.0 CB B:PHE210 4.8 47.8 1.0 CG B:PHI216 4.8 51.5 1.0

Iodine binding site 4 out of 32 in the Cryo-Em Structure of HNRAC1-8I Fibril


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Cryo-Em Structure of HNRAC1-8I Fibril within 5.0Å range: probe atom residue distance (Å) B Occ C:I216 b:62.5 occ:1.00 I C:PHI216 0.0 62.5 1.0 CZ C:PHI216 2.0 62.5 1.0 CE2 C:PHI216 3.0 62.5 1.0 CE1 C:PHI216 3.0 62.5 1.0 OD2 C:ASP214 3.2 59.2 1.0 CE1 C:PHE210 3.6 58.0 1.0 CD1 C:PHE210 3.6 58.0 1.0 CZ C:PHE210 3.7 58.0 1.0 CG C:PHE210 3.7 58.0 1.0 CE2 C:PHE210 3.8 58.0 1.0 CD2 D:PHI216 3.8 64.5 1.0 CD2 C:PHE210 3.8 58.0 1.0 CG C:ASP214 4.2 59.2 1.0 CG D:PHI216 4.2 64.5 1.0 CB D:PHI216 4.2 64.5 1.0 CD2 C:PHI216 4.3 62.5 1.0 CD1 C:PHI216 4.3 62.5 1.0 CE2 D:PHI216 4.5 64.5 1.0 CB C:PHE210 4.5 58.0 1.0 CG C:PHI216 4.8 62.5 1.0 CB C:ASP214 4.9 59.2 1.0 OD1 C:ASP214 4.9 59.2 1.0

Iodine binding site 5 out of 32 in the Cryo-Em Structure of HNRAC1-8I Fibril


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Cryo-Em Structure of HNRAC1-8I Fibril within 5.0Å range: probe atom residue distance (Å) B Occ D:I216 b:64.5 occ:1.00 I D:PHI216 0.0 64.5 1.0 CZ D:PHI216 2.0 64.5 1.0 CE2 D:PHI216 3.0 64.5 1.0 CE1 D:PHI216 3.0 64.5 1.0 CE1 D:PHE210 3.5 60.8 1.0 CZ D:PHE210 3.7 60.8 1.0 OD2 D:ASP214 4.0 64.7 1.0 CD1 D:PHE210 4.2 60.8 1.0 CD2 D:PHI216 4.3 64.5 1.0 CD1 D:PHI216 4.3 64.5 1.0 CD2 C:PHI216 4.4 62.5 1.0 CE2 D:PHE210 4.5 60.8 1.0 CE2 C:PHI216 4.5 62.5 1.0 CB D:ASP214 4.8 64.7 1.0 CG D:PHI216 4.8 64.5 1.0 CG D:ASP214 4.8 64.7 1.0 CG D:PHE210 4.9 60.8 1.0

Iodine binding site 6 out of 32 in the Cryo-Em Structure of HNRAC1-8I Fibril


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Cryo-Em Structure of HNRAC1-8I Fibril within 5.0Å range: probe atom residue distance (Å) B Occ E:I216 b:63.5 occ:1.00 I E:PHI216 0.0 63.5 1.0 CZ E:PHI216 2.0 63.5 1.0 CZ E:PHE210 2.4 62.9 1.0 CE1 E:PHE210 2.5 62.9 1.0 CE2 E:PHI216 3.0 63.5 1.0 CE1 E:PHI216 3.0 63.5 1.0 CE2 E:PHE210 3.2 62.9 1.0 OD2 E:ASP214 3.3 63.4 1.0 CD1 E:PHE210 3.4 62.9 1.0 CB E:ASP214 3.8 63.4 1.0 CD2 F:PHI216 3.9 56.7 1.0 CG E:ASP214 3.9 63.4 1.0 CD2 E:PHE210 4.0 62.9 1.0 CG E:PHE210 4.1 62.9 1.0 CB F:PHI216 4.2 56.7 1.0 CD2 E:PHI216 4.3 63.5 1.0 CD1 E:PHI216 4.3 63.5 1.0 CG F:PHI216 4.3 56.7 1.0 O F:PHI216 4.7 56.7 1.0 CE2 F:PHI216 4.7 56.7 1.0 CG E:PHI216 4.8 63.5 1.0 C F:PHI216 4.9 56.7 1.0

Iodine binding site 7 out of 32 in the Cryo-Em Structure of HNRAC1-8I Fibril


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Cryo-Em Structure of HNRAC1-8I Fibril within 5.0Å range: probe atom residue distance (Å) B Occ F:I216 b:56.7 occ:1.00 I F:PHI216 0.0 56.7 1.0 CZ F:PHI216 2.0 56.7 1.0 CE1 F:PHI216 3.0 56.7 1.0 CE2 F:PHI216 3.0 56.7 1.0 CG F:PHE210 3.6 49.9 1.0 CD1 F:PHE210 3.7 49.9 1.0 CD2 F:PHE210 3.9 49.9 1.0 OD2 F:ASP214 4.0 51.2 1.0 CE1 F:PHE210 4.0 49.9 1.0 CB F:PHE210 4.1 49.9 1.0 CE2 F:PHE210 4.2 49.9 1.0 CZ F:PHE210 4.3 49.9 1.0 CD1 F:PHI216 4.3 56.7 1.0 CD2 F:PHI216 4.3 56.7 1.0 CG F:PHI216 4.8 56.7 1.0 CG F:ASP214 5.0 51.2 1.0

Iodine binding site 8 out of 32 in the Cryo-Em Structure of HNRAC1-8I Fibril


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Cryo-Em Structure of HNRAC1-8I Fibril within 5.0Å range: probe atom residue distance (Å) B Occ G:I216 b:46.1 occ:1.00 I G:PHI216 0.0 46.1 1.0 CZ G:PHI216 2.0 46.1 1.0 CE1 G:PHI216 3.0 46.1 1.0 CE2 G:PHI216 3.0 46.1 1.0 OD2 G:ASP214 3.6 43.6 1.0 CG G:PHE210 3.8 44.0 1.0 CB G:PHE210 4.0 44.0 1.0 CD1 G:PHE210 4.0 44.0 1.0 CD2 G:PHE210 4.2 44.0 1.0 CD1 G:PHI216 4.3 46.1 1.0 CD2 G:PHI216 4.3 46.1 1.0 CG G:ASP214 4.5 43.6 1.0 CE1 G:PHE210 4.5 44.0 1.0 CE2 G:PHE210 4.7 44.0 1.0 CG G:PHI216 4.8 46.1 1.0 CZ G:PHE210 4.8 44.0 1.0 CB G:ASP214 4.9 43.6 1.0 CD2 c:PHI216 4.9 47.7 1.0

Iodine binding site 9 out of 32 in the Cryo-Em Structure of HNRAC1-8I Fibril


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Cryo-Em Structure of HNRAC1-8I Fibril within 5.0Å range: probe atom residue distance (Å) B Occ a:I216 b:51.5 occ:1.00 I a:PHI216 0.0 51.5 1.0 CZ a:PHI216 2.0 51.5 1.0 CE2 a:PHI216 3.0 51.5 1.0 CE1 a:PHI216 3.0 51.5 1.0 CD1 a:PHE210 3.5 52.5 1.0 OD2 a:ASP214 3.5 52.2 1.0 CG a:PHE210 3.5 52.5 1.0 CE1 a:PHE210 3.7 52.5 1.0 CD2 a:PHE210 3.8 52.5 1.0 CZ a:PHE210 4.0 52.5 1.0 CE2 a:PHE210 4.0 52.5 1.0 CB a:PHE210 4.1 52.5 1.0 CD2 a:PHI216 4.3 51.5 1.0 CD1 a:PHI216 4.3 51.5 1.0 CG a:ASP214 4.4 52.2 1.0 CB a:ASP214 4.7 52.2 1.0 CG a:PHI216 4.8 51.5 1.0

Iodine binding site 10 out of 32 in the Cryo-Em Structure of HNRAC1-8I Fibril


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Cryo-Em Structure of HNRAC1-8I Fibril within 5.0Å range: probe atom residue distance (Å) B Occ I:I216 b:48.9 occ:1.00 I I:PHI216 0.0 48.9 1.0 CZ I:PHI216 2.0 48.9 1.0 CE2 I:PHI216 3.0 48.9 1.0 CE1 I:PHI216 3.0 48.9 1.0 OD2 I:ASP214 3.2 48.0 1.0 CD2 I:PHE210 3.9 50.1 1.0 CG I:ASP214 4.0 48.0 1.0 CG I:PHE210 4.1 50.1 1.0 CB I:PHE210 4.1 50.1 1.0 CB a:PHI216 4.2 51.5 1.0 CD2 I:PHI216 4.3 48.9 1.0 CD1 I:PHI216 4.3 48.9 1.0 CB I:ASP214 4.4 48.0 1.0 CG a:PHI216 4.5 51.5 1.0 CE2 I:PHE210 4.6 50.1 1.0 CD2 a:PHI216 4.8 51.5 1.0 CD1 I:PHE210 4.8 50.1 1.0 CG I:PHI216 4.8 48.9 1.0 OD1 I:ASP214 5.0 48.0 1.0

D.N.Li, Y.Y.Ma, D.Li, B.Dai, C.Liu. Cryo-Em Structure of HNRAC1-8I Fibril To Be Published.