Iodine in PDB 8iks: Cryo-Em Structure of HNRAC1-2I8I Fibril.

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 32;

Binding sites:

The binding sites of Iodine atom in the Cryo-Em Structure of HNRAC1-2I8I Fibril. (pdb code 8iks). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 32 binding sites of Iodine where determined in the Cryo-Em Structure of HNRAC1-2I8I Fibril., PDB code: 8iks:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 32 in the Cryo-Em Structure of HNRAC1-2I8I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Cryo-Em Structure of HNRAC1-2I8I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ F:I216 b:116.8 occ:1.00 I F:PHI216 0.0 116.8 1.0 CZ F:PHI216 2.1 116.8 1.0 CE2 O:PHI222 2.6 130.7 1.0 CZ O:PHI222 2.8 130.7 1.0 CE2 F:PHI216 3.0 116.8 1.0 CE1 F:PHI216 3.0 116.8 1.0 OD1 O:ASP220 3.2 120.9 1.0 I O:PHI222 3.3 130.7 1.0 CD2 O:PHI222 3.3 130.7 1.0 CE1 O:PHI222 3.6 130.7 1.0 CG O:ASP220 3.7 120.9 1.0 OD2 O:ASP220 4.0 120.9 1.0 CG O:PHI222 4.1 130.7 1.0 CD1 O:PHI222 4.2 130.7 1.0 CD2 F:PHI216 4.3 116.8 1.0 CD1 F:PHI216 4.3 116.8 1.0 CB O:ASP220 4.5 120.9 1.0 N F:GLY215 4.6 112.3 1.0 CG F:PHI216 4.9 116.8 1.0

Iodine binding site 2 out of 32 in the Cryo-Em Structure of HNRAC1-2I8I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Cryo-Em Structure of HNRAC1-2I8I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ F:I222 b:106.0 occ:1.00 I F:PHI222 0.0 106.0 1.0 CZ F:PHI222 2.0 106.0 1.0 CE1 F:PHI222 2.9 106.0 1.0 CE2 F:PHI222 3.0 106.0 1.0 N L:GLY223 3.3 89.7 1.0 CA L:GLY223 3.6 89.7 1.0 I P:PHI216 4.1 91.4 1.0 C L:PHI222 4.2 93.3 1.0 CD1 F:PHI222 4.3 106.0 1.0 CD2 F:PHI222 4.3 106.0 1.0 OD1 F:ASP220 4.3 102.0 1.0 CA L:PHI222 4.6 93.3 1.0 CG F:PHI222 4.8 106.0 1.0 CG F:ASP220 4.9 102.0 1.0 C L:GLY223 5.0 89.7 1.0

Iodine binding site 3 out of 32 in the Cryo-Em Structure of HNRAC1-2I8I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Cryo-Em Structure of HNRAC1-2I8I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ A:I216 b:116.0 occ:1.00 I A:PHI216 0.0 116.0 1.0 CZ A:PHI216 2.0 116.0 1.0 OD2 A:ASP220 2.4 127.2 1.0 CE1 A:PHI216 3.0 116.0 1.0 CE2 A:PHI216 3.0 116.0 1.0 CG A:ASP220 3.5 127.2 1.0 OD1 A:ASP220 4.0 127.2 1.0 CD1 A:PHI216 4.3 116.0 1.0 CD2 A:PHI216 4.3 116.0 1.0 CB A:ASP220 4.6 127.2 1.0 CD2 A:PHI222 4.8 138.3 1.0 CG A:PHI216 4.8 116.0 1.0 CE2 A:PHI222 4.9 138.3 1.0

Iodine binding site 4 out of 32 in the Cryo-Em Structure of HNRAC1-2I8I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Cryo-Em Structure of HNRAC1-2I8I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ A:I222 b:138.3 occ:1.00 I A:PHI222 0.0 138.3 1.0 CZ A:PHI222 2.0 138.3 1.0 CE1 A:PHI222 3.0 138.3 1.0 CE2 A:PHI222 3.0 138.3 1.0 CA M:PHI216 3.7 133.2 1.0 N M:PHI216 4.2 133.2 1.0 O M:GLY217 4.2 125.5 1.0 C M:PHI216 4.3 133.2 1.0 CD1 A:PHI222 4.3 138.3 1.0 CD2 A:PHI222 4.3 138.3 1.0 CA M:GLY218 4.6 120.6 1.0 O M:GLY218 4.7 120.6 1.0 N M:GLY217 4.7 125.5 1.0 CB M:PHI216 4.8 133.2 1.0 C M:GLY217 4.8 125.5 1.0 O M:PHI216 4.8 133.2 1.0 CG A:PHI222 4.8 138.3 1.0 CD1 M:PHI216 4.8 133.2 1.0 I H:PHI222 4.9 146.4 1.0 N M:GLY218 4.9 120.6 1.0

Iodine binding site 5 out of 32 in the Cryo-Em Structure of HNRAC1-2I8I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Cryo-Em Structure of HNRAC1-2I8I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ B:I216 b:112.0 occ:1.00 I B:PHI216 0.0 112.0 1.0 CZ B:PHI216 2.1 112.0 1.0 CE1 B:PHI216 3.0 112.0 1.0 CE2 B:PHI216 3.0 112.0 1.0 O G:GLY217 3.2 102.6 1.0 ND2 G:ASN219 3.6 98.5 1.0 C G:GLY217 4.1 102.6 1.0 CD1 B:PHI216 4.3 112.0 1.0 CD2 B:PHI216 4.3 112.0 1.0 CA G:GLY217 4.4 102.6 1.0 N G:GLY217 4.4 102.6 1.0 CG G:ASN219 4.6 98.5 1.0 CB G:PHI216 4.7 105.0 1.0 OD1 G:ASN219 4.8 98.5 1.0 CG B:PHI216 4.9 112.0 1.0

Iodine binding site 6 out of 32 in the Cryo-Em Structure of HNRAC1-2I8I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Cryo-Em Structure of HNRAC1-2I8I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ B:I222 b:103.5 occ:1.00 I B:PHI222 0.0 103.5 1.0 CZ B:PHI222 2.0 103.5 1.0 CE2 B:PHI222 3.0 103.5 1.0 CE1 B:PHI222 3.0 103.5 1.0 OD2 B:ASP220 3.0 101.4 1.0 CD2 B:PHI216 3.6 112.0 1.0 CE2 B:PHI216 3.7 112.0 1.0 CG B:PHI216 3.7 112.0 1.0 CZ B:PHI216 3.9 112.0 1.0 CD1 B:PHI216 3.9 112.0 1.0 CE1 B:PHI216 4.0 112.0 1.0 CG B:ASP220 4.2 101.4 1.0 CD1 B:PHI222 4.3 103.5 1.0 CD2 B:PHI222 4.3 103.5 1.0 CB B:PHI216 4.4 112.0 1.0 CG B:PHI222 4.8 103.5 1.0 OD1 B:ASP220 4.8 101.4 1.0 CD2 G:PHI216 4.9 105.0 1.0

Iodine binding site 7 out of 32 in the Cryo-Em Structure of HNRAC1-2I8I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Cryo-Em Structure of HNRAC1-2I8I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ C:I216 b:100.2 occ:1.00 I C:PHI216 0.0 100.2 1.0 CZ C:PHI216 2.0 100.2 1.0 CE1 C:PHI216 2.9 100.2 1.0 CE2 C:PHI216 3.0 100.2 1.0 CB C:PHI222 3.5 104.6 1.0 CD1 C:PHI222 3.8 104.6 1.0 N C:PHI222 3.8 104.6 1.0 CG C:PHI222 3.9 104.6 1.0 CA C:PHI222 3.9 104.6 1.0 CB C:ASP220 3.9 93.4 1.0 OD2 C:ASP220 4.2 93.4 1.0 CD1 C:PHI216 4.2 100.2 1.0 CD2 C:PHI216 4.3 100.2 1.0 CG C:ASP220 4.5 93.4 1.0 C C:ASN221 4.7 95.5 1.0 N C:ASN221 4.8 95.5 1.0 CG C:PHI216 4.8 100.2 1.0 CE1 C:PHI222 4.8 104.6 1.0 CD2 C:PHI222 4.9 104.6 1.0

Iodine binding site 8 out of 32 in the Cryo-Em Structure of HNRAC1-2I8I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Cryo-Em Structure of HNRAC1-2I8I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ C:I222 b:104.6 occ:1.00 I C:PHI222 0.0 104.6 1.0 CZ C:PHI222 2.0 104.6 1.0 CE2 C:PHI222 3.0 104.6 1.0 CE1 C:PHI222 3.0 104.6 1.0 CD2 C:PHI222 4.3 104.6 1.0 CD1 C:PHI222 4.3 104.6 1.0 CG C:PHI222 4.8 104.6 1.0

Iodine binding site 9 out of 32 in the Cryo-Em Structure of HNRAC1-2I8I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Cryo-Em Structure of HNRAC1-2I8I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ D:I216 b:119.3 occ:1.00 I D:PHI216 0.0 119.3 1.0 CZ D:PHI216 2.0 119.3 1.0 O H:GLY217 2.5 117.2 1.0 CE2 D:PHI216 3.0 119.3 1.0 CE1 D:PHI216 3.0 119.3 1.0 C H:GLY217 3.6 117.2 1.0 CA H:GLY218 3.8 124.7 1.0 CB H:PHI216 3.8 116.0 1.0 N H:GLY218 4.1 124.7 1.0 N H:GLY217 4.3 117.2 1.0 CD2 D:PHI216 4.3 119.3 1.0 CD1 D:PHI216 4.3 119.3 1.0 C H:GLY218 4.4 124.7 1.0 CA H:PHI216 4.5 116.0 1.0 C H:PHI216 4.5 116.0 1.0 N H:ASN219 4.7 128.3 1.0 CA H:GLY217 4.8 117.2 1.0 CG D:PHI216 4.8 119.3 1.0 CG H:PHI216 5.0 116.0 1.0

Iodine binding site 10 out of 32 in the Cryo-Em Structure of HNRAC1-2I8I Fibril.


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Cryo-Em Structure of HNRAC1-2I8I Fibril. within 5.0Å range: probe atom residue distance (Å) B Occ D:I222 b:107.7 occ:1.00 I D:PHI222 0.0 107.7 1.0 CZ D:PHI222 2.0 107.7 1.0 CE2 D:PHI222 2.9 107.7 1.0 CE1 D:PHI222 3.0 107.7 1.0 CG D:PHI216 3.4 119.3 1.0 CD1 D:PHI216 3.5 119.3 1.0 CD2 D:PHI216 3.5 119.3 1.0 CE1 D:PHI216 3.6 119.3 1.0 CE2 D:PHI216 3.6 119.3 1.0 CZ D:PHI216 3.7 119.3 1.0 CB D:PHI216 4.1 119.3 1.0 OD2 D:ASP220 4.2 106.5 1.0 CD2 D:PHI222 4.2 107.7 1.0 CD1 D:PHI222 4.3 107.7 1.0 CG D:PHI222 4.8 107.7 1.0 CA D:PHI216 5.0 119.3 1.0

D.N.Li, Y.Y.Ma, D.Li, B.Dai, C.Liu. Cryo-Em Structure of HNRAC1-2I8I Fibril. To Be Published.