Iodine in PDB 8iy7: Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 48;

Binding sites:

The binding sites of Iodine atom in the Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1 (pdb code 8iy7). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 48 binding sites of Iodine where determined in the Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1, PDB code: 8iy7:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 48 in the Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1 within 5.0Å range: probe atom residue distance (Å) B Occ A:I23 b:65.6 occ:1.00 I A:PHI23 0.0 65.6 1.0 CZ A:PHI23 2.0 65.6 1.0 CE2 A:PHI23 2.9 65.6 1.0 CE1 A:PHI23 3.0 65.6 1.0 CA D:GLY30 3.6 76.0 1.0 I A:PHI29 4.1 62.6 1.0 N D:GLY30 4.2 76.0 1.0 CD2 A:PHI23 4.3 65.6 1.0 CD1 A:PHI23 4.3 65.6 1.0 C D:PHI29 4.7 77.8 1.0 C D:GLY30 4.7 76.0 1.0 CE1 A:PHI29 4.8 62.6 1.0 O D:GLY30 4.8 76.0 1.0 CG A:PHI23 4.8 65.6 1.0 CZ A:PHI29 4.9 62.6 1.0 O D:PHI29 4.9 77.8 1.0

Iodine binding site 2 out of 48 in the Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1 within 5.0Å range: probe atom residue distance (Å) B Occ A:I29 b:62.6 occ:1.00 I A:PHI29 0.0 62.6 1.0 CZ A:PHI29 2.0 62.6 1.0 CE2 A:PHI29 2.9 62.6 1.0 CE1 A:PHI29 3.0 62.6 1.0 CE2 A:PHI23 3.3 65.6 1.0 CZ A:PHI23 3.8 65.6 1.0 CD2 A:PHI23 3.9 65.6 1.0 I A:PHI23 4.1 65.6 1.0 CD2 A:PHI29 4.2 62.6 1.0 CD1 A:PHI29 4.3 62.6 1.0 CE1 A:PHI23 4.8 65.6 1.0 CG A:PHI29 4.8 62.6 1.0 CG A:PHI23 4.9 65.6 1.0 CB D:PHI29 5.0 77.8 1.0

Iodine binding site 3 out of 48 in the Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1 within 5.0Å range: probe atom residue distance (Å) B Occ B:I23 b:53.9 occ:1.00 I B:PHI23 0.0 53.9 1.0 CZ B:PHI23 2.0 53.9 1.0 CE2 B:PHI23 3.0 53.9 1.0 CE1 B:PHI23 3.0 53.9 1.0 I B:PHI29 4.0 49.8 1.0 CD2 B:PHI23 4.3 53.9 1.0 CD1 B:PHI23 4.3 53.9 1.0 CG B:PHI23 4.8 53.9 1.0

Iodine binding site 4 out of 48 in the Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1 within 5.0Å range: probe atom residue distance (Å) B Occ B:I29 b:49.8 occ:1.00 I B:PHI29 0.0 49.8 1.0 CZ B:PHI29 2.0 49.8 1.0 CE1 B:PHI29 2.9 49.8 1.0 CE2 B:PHI29 2.9 49.8 1.0 CZ B:PHI23 3.2 53.9 1.0 CE2 B:PHI23 3.3 53.9 1.0 CE1 B:PHI23 3.4 53.9 1.0 CD2 B:PHI23 3.6 53.9 1.0 CD1 B:PHI23 3.7 53.9 1.0 CG B:PHI23 3.9 53.9 1.0 I B:PHI23 4.0 53.9 1.0 CD1 B:PHI29 4.2 49.8 1.0 CD2 B:PHI29 4.2 49.8 1.0 ND2 B:ASN27 4.4 50.0 1.0 CG B:ASN27 4.5 50.0 1.0 CG B:PHI29 4.7 49.8 1.0 OD1 B:ASN27 4.8 50.0 1.0 CB B:PHI23 4.9 53.9 1.0 CB B:ASN27 4.9 50.0 1.0

Iodine binding site 5 out of 48 in the Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1 within 5.0Å range: probe atom residue distance (Å) B Occ C:I23 b:69.2 occ:1.00 I C:PHI23 0.0 69.2 1.0 CZ C:PHI23 2.0 69.2 1.0 CE2 C:PHI23 3.0 69.2 1.0 CE1 C:PHI23 3.0 69.2 1.0 OXT E:GLY30 3.7 66.9 1.0 CD2 C:PHI23 4.3 69.2 1.0 CD1 C:PHI23 4.3 69.2 1.0 O E:PHI29 4.4 66.5 1.0 C E:GLY30 4.6 66.9 1.0 C E:PHI29 4.7 66.5 1.0 CG C:PHI23 4.8 69.2 1.0 CD2 E:PHI29 4.9 66.5 1.0 CB E:PHI29 5.0 66.5 1.0

Iodine binding site 6 out of 48 in the Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1 within 5.0Å range: probe atom residue distance (Å) B Occ C:I29 b:64.3 occ:1.00 I C:PHI29 0.0 64.3 1.0 CZ C:PHI29 2.0 64.3 1.0 CE1 C:PHI29 2.9 64.3 1.0 CE2 C:PHI29 3.0 64.3 1.0 CE1 C:PHI23 3.4 69.2 1.0 CD1 C:PHI23 3.4 69.2 1.0 CD1 C:PHI29 4.2 64.3 1.0 CZ C:PHI23 4.2 69.2 1.0 O E:PHI29 4.3 66.5 1.0 CD2 C:PHI29 4.3 64.3 1.0 CG C:PHI23 4.3 69.2 1.0 ND2 C:ASN27 4.4 59.1 1.0 CB E:PHI29 4.5 66.5 1.0 CB C:ASN27 4.6 59.1 1.0 CG C:PHI29 4.8 64.3 1.0 CG C:ASN27 4.8 59.1 1.0 CE2 C:PHI23 4.9 69.2 1.0 CD2 C:PHI23 5.0 69.2 1.0

Iodine binding site 7 out of 48 in the Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1 within 5.0Å range: probe atom residue distance (Å) B Occ D:I23 b:86.8 occ:1.00 I D:PHI23 0.0 86.8 1.0 CZ D:PHI23 2.0 86.8 1.0 CE1 D:PHI23 2.9 86.8 1.0 CE2 D:PHI23 2.9 86.8 1.0 CA A:GLY30 3.5 60.3 1.0 OXT A:GLY30 3.6 60.3 1.0 C A:GLY30 3.9 60.3 1.0 O A:PHI29 4.2 62.6 1.0 I D:PHI29 4.3 77.8 1.0 CD1 D:PHI23 4.3 86.8 1.0 CD2 D:PHI23 4.3 86.8 1.0 N A:GLY30 4.5 60.3 1.0 C A:PHI29 4.7 62.6 1.0 CG D:PHI23 4.8 86.8 1.0 O A:GLY30 4.9 60.3 1.0

Iodine binding site 8 out of 48 in the Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1 within 5.0Å range: probe atom residue distance (Å) B Occ D:I29 b:77.8 occ:1.00 I D:PHI29 0.0 77.8 1.0 CZ D:PHI29 2.0 77.8 1.0 CE1 D:PHI29 2.9 77.8 1.0 CE2 D:PHI29 3.0 77.8 1.0 CZ D:PHI23 3.4 86.8 1.0 CE1 D:PHI23 3.6 86.8 1.0 CE2 D:PHI23 3.6 86.8 1.0 CD1 D:PHI23 3.8 86.8 1.0 CD2 D:PHI23 3.9 86.8 1.0 CG D:PHI23 4.0 86.8 1.0 I D:PHI23 4.3 86.8 1.0 CD1 D:PHI29 4.3 77.8 1.0 CD2 D:PHI29 4.3 77.8 1.0 CB D:ASN27 4.6 81.5 1.0 ND2 D:ASN27 4.6 81.5 1.0 CG D:PHI29 4.8 77.8 1.0 CG D:ASN27 4.9 81.5 1.0 CB D:PHI23 4.9 86.8 1.0

Iodine binding site 9 out of 48 in the Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1 within 5.0Å range: probe atom residue distance (Å) B Occ E:I23 b:76.0 occ:1.00 I E:PHI23 0.0 76.0 1.0 CZ E:PHI23 2.0 76.0 1.0 CE2 E:PHI23 3.0 76.0 1.0 CE1 E:PHI23 3.0 76.0 1.0 O C:GLY30 3.8 63.0 1.0 N C:GLY30 3.9 63.0 1.0 CD2 E:PHI23 4.3 76.0 1.0 CD1 E:PHI23 4.3 76.0 1.0 C C:GLY30 4.3 63.0 1.0 CA C:GLY30 4.4 63.0 1.0 I E:PHI29 4.7 66.5 1.0 C C:PHI29 4.8 64.3 1.0 CE1 E:PHI29 4.8 66.5 1.0 CG E:PHI23 4.8 76.0 1.0 CA C:PHI29 5.0 64.3 1.0

Iodine binding site 10 out of 48 in the Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1 within 5.0Å range: probe atom residue distance (Å) B Occ E:I29 b:66.5 occ:1.00 I E:PHI29 0.0 66.5 1.0 CZ E:PHI29 2.0 66.5 1.0 CE2 E:PHI29 3.0 66.5 1.0 CE1 E:PHI29 3.0 66.5 1.0 CE2 E:PHI23 3.4 76.0 1.0 CD2 E:PHI23 3.7 76.0 1.0 CZ E:PHI23 3.8 76.0 1.0 CD2 E:PHI29 4.3 66.5 1.0 CG E:PHI23 4.3 76.0 1.0 CD1 E:PHI29 4.3 66.5 1.0 CE1 E:PHI23 4.4 76.0 1.0 OD1 E:ASN27 4.4 65.6 1.0 CD1 E:PHI23 4.6 76.0 1.0 I E:PHI23 4.7 76.0 1.0 CG E:PHI29 4.8 66.5 1.0

D.N.Li, Y.Y.Ma, D.Li, B.Dai, C.Liu. Cryo-Em Structure of Dip-2I8I Fibril POLYMORPH1 To Be Published.