Iodine in PDB 8izz: Cryo-Em Structure of Dip-2I8I Polymorph 2

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 44;

Binding sites:

The binding sites of Iodine atom in the Cryo-Em Structure of Dip-2I8I Polymorph 2 (pdb code 8izz). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 44 binding sites of Iodine where determined in the Cryo-Em Structure of Dip-2I8I Polymorph 2, PDB code: 8izz:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:I23 b:106.7 occ:1.00 I A:PHI23 0.0 106.7 1.0 CZ A:PHI23 2.0 106.7 1.0 CE1 A:PHI23 3.0 106.7 1.0 CE2 A:PHI23 3.0 106.7 1.0 CD2 A:PHI23 4.3 106.7 1.0 CD1 A:PHI23 4.3 106.7 1.0 CA D:GLY30 4.5 74.8 1.0 CG A:PHI23 4.8 106.7 1.0 O D:GLY30 5.0 74.8 1.0

Iodine binding site 2 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:I29 b:85.5 occ:1.00 I A:PHI29 0.0 85.5 1.0 CZ A:PHI29 2.0 85.5 1.0 CE2 A:PHI29 2.9 85.5 1.0 CE1 A:PHI29 3.0 85.5 1.0 CD2 A:PHI23 3.4 106.7 1.0 CE2 A:PHI23 3.7 106.7 1.0 O D:PHI29 4.2 76.6 1.0 CD2 A:PHI29 4.3 85.5 1.0 CD1 A:PHI29 4.3 85.5 1.0 CG A:PHI23 4.4 106.7 1.0 ND2 A:ASN27 4.7 80.2 1.0 CG A:PHI29 4.8 85.5 1.0 CB A:PHI23 4.8 106.7 1.0 CZ A:PHI23 4.9 106.7 1.0

Iodine binding site 3 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range: probe atom residue distance (Å) B Occ B:I23 b:101.8 occ:1.00 I B:PHI23 0.0 101.8 1.0 CZ B:PHI23 2.1 101.8 1.0 CE1 B:PHI23 3.0 101.8 1.0 CE2 B:PHI23 3.0 101.8 1.0 CE2 B:PHI29 4.3 97.5 1.0 CD1 B:PHI23 4.3 101.8 1.0 CD2 B:PHI23 4.3 101.8 1.0 OXT F:GLY30 4.8 81.2 1.0 CG B:PHI23 4.9 101.8 1.0 N B:GLY22 4.9 94.9 1.0 CD2 B:PHI29 4.9 97.5 1.0

Iodine binding site 4 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range: probe atom residue distance (Å) B Occ B:I29 b:97.5 occ:1.00 I B:PHI29 0.0 97.5 1.0 CZ B:PHI29 2.0 97.5 1.0 CE1 B:PHI29 3.0 97.5 1.0 CE2 B:PHI29 3.0 97.5 1.0 CD1 B:PHI29 4.3 97.5 1.0 CD2 B:PHI29 4.3 97.5 1.0 CG B:PHI29 4.8 97.5 1.0 CZ B:PHI23 4.9 101.8 1.0

Iodine binding site 5 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range: probe atom residue distance (Å) B Occ C:I23 b:139.1 occ:1.00 I C:PHI23 0.0 139.1 1.0 CZ C:PHI23 2.0 139.1 1.0 CE2 C:PHI23 3.0 139.1 1.0 CE1 C:PHI23 3.0 139.1 1.0 CB E:PHI29 4.1 123.0 1.0 CD1 C:PHI23 4.3 139.1 1.0 CD2 C:PHI23 4.3 139.1 1.0 I C:PHI29 4.4 114.7 1.0 O E:PHI29 4.4 123.0 1.0 C E:PHI29 4.7 123.0 1.0 CG C:PHI23 4.8 139.1 1.0 CA E:PHI29 4.9 123.0 1.0

Iodine binding site 6 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range: probe atom residue distance (Å) B Occ C:I29 b:114.7 occ:1.00 I C:PHI29 0.0 114.7 1.0 CZ C:PHI29 2.0 114.7 1.0 CE2 C:PHI29 3.0 114.7 1.0 CE1 C:PHI29 3.0 114.7 1.0 CE2 C:PHI23 4.2 139.1 1.0 CD2 C:PHI29 4.3 114.7 1.0 CD1 C:PHI29 4.3 114.7 1.0 CZ C:PHI23 4.4 139.1 1.0 I C:PHI23 4.4 139.1 1.0 CG C:PHI29 4.8 114.7 1.0 CD2 C:PHI23 4.9 139.1 1.0

Iodine binding site 7 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range: probe atom residue distance (Å) B Occ D:I23 b:105.1 occ:1.00 I D:PHI23 0.0 105.1 1.0 CZ D:PHI23 2.1 105.1 1.0 CE1 D:PHI23 3.0 105.1 1.0 CE2 D:PHI23 3.0 105.1 1.0 CD1 D:PHI23 4.3 105.1 1.0 CD2 D:PHI23 4.3 105.1 1.0 O A:GLY30 4.5 85.9 1.0 CA A:GLY30 4.8 85.9 1.0 CG D:PHI23 4.9 105.1 1.0 N A:GLY30 4.9 85.9 1.0

Iodine binding site 8 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range: probe atom residue distance (Å) B Occ D:I29 b:76.6 occ:1.00 I D:PHI29 0.0 76.6 1.0 CZ D:PHI29 2.0 76.6 1.0 CE1 D:PHI29 3.0 76.6 1.0 CE2 D:PHI29 3.0 76.6 1.0 O A:GLY30 3.8 85.9 1.0 CD2 D:PHI23 3.9 105.1 1.0 CE2 D:PHI23 4.1 105.1 1.0 CD1 D:PHI29 4.3 76.6 1.0 CD2 D:PHI29 4.3 76.6 1.0 CG D:PHI23 4.5 105.1 1.0 CZ D:PHI23 4.8 105.1 1.0 CG D:PHI29 4.8 76.6 1.0 C A:GLY30 4.9 85.9 1.0

Iodine binding site 9 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range: probe atom residue distance (Å) B Occ E:I23 b:123.9 occ:1.00 I E:PHI23 0.0 123.9 1.0 CZ E:PHI23 2.0 123.9 1.0 CE1 E:PHI23 2.9 123.9 1.0 CE2 E:PHI23 3.0 123.9 1.0 O C:PHI29 3.2 114.7 1.0 C C:PHI29 3.8 114.7 1.0 C C:GLY30 4.0 109.9 1.0 OXT C:GLY30 4.1 109.9 1.0 I E:PHI29 4.1 123.0 1.0 CA C:GLY30 4.2 109.9 1.0 CD1 E:PHI23 4.3 123.9 1.0 CD2 E:PHI23 4.3 123.9 1.0 N C:GLY30 4.3 109.9 1.0 O C:GLY30 4.3 109.9 1.0 CB C:PHI29 4.3 114.7 1.0 CA C:PHI29 4.7 114.7 1.0 CG E:PHI23 4.8 123.9 1.0

Iodine binding site 10 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range: probe atom residue distance (Å) B Occ E:I29 b:123.0 occ:1.00 I E:PHI29 0.0 123.0 1.0 CZ E:PHI29 2.0 123.0 1.0 CE2 E:PHI29 3.0 123.0 1.0 CE1 E:PHI29 3.0 123.0 1.0 CZ E:PHI23 3.8 123.9 1.0 CE1 E:PHI23 3.8 123.9 1.0 I E:PHI23 4.1 123.9 1.0 CD2 E:PHI29 4.3 123.0 1.0 CD1 E:PHI29 4.3 123.0 1.0 CE2 E:PHI23 4.3 123.9 1.0 CD1 E:PHI23 4.4 123.9 1.0 CB C:PHI29 4.7 114.7 1.0 CG E:PHI29 4.8 123.0 1.0 CD2 E:PHI23 4.8 123.9 1.0 CG E:PHI23 4.9 123.9 1.0

D.N.Li, Y.Y.Ma, D.Li, B.Dai, C.Liu. Cryo-Em Structure of Dip-2I8I Fibril Polymorph 2 To Be Published.