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Iodine in PDB 8izz: Cryo-Em Structure of Dip-2I8I Polymorph 2

Iodine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 44;

Binding sites:

The binding sites of Iodine atom in the Cryo-Em Structure of Dip-2I8I Polymorph 2 (pdb code 8izz). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 44 binding sites of Iodine where determined in the Cryo-Em Structure of Dip-2I8I Polymorph 2, PDB code: 8izz:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 44 in 8izz

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Iodine binding site 1 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I23

b:106.7
occ:1.00
I A:PHI23 0.0 106.7 1.0
CZ A:PHI23 2.0 106.7 1.0
CE1 A:PHI23 3.0 106.7 1.0
CE2 A:PHI23 3.0 106.7 1.0
CD2 A:PHI23 4.3 106.7 1.0
CD1 A:PHI23 4.3 106.7 1.0
CA D:GLY30 4.5 74.8 1.0
CG A:PHI23 4.8 106.7 1.0
O D:GLY30 5.0 74.8 1.0

Iodine binding site 2 out of 44 in 8izz

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Iodine binding site 2 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I29

b:85.5
occ:1.00
I A:PHI29 0.0 85.5 1.0
CZ A:PHI29 2.0 85.5 1.0
CE2 A:PHI29 2.9 85.5 1.0
CE1 A:PHI29 3.0 85.5 1.0
CD2 A:PHI23 3.4 106.7 1.0
CE2 A:PHI23 3.7 106.7 1.0
O D:PHI29 4.2 76.6 1.0
CD2 A:PHI29 4.3 85.5 1.0
CD1 A:PHI29 4.3 85.5 1.0
CG A:PHI23 4.4 106.7 1.0
ND2 A:ASN27 4.7 80.2 1.0
CG A:PHI29 4.8 85.5 1.0
CB A:PHI23 4.8 106.7 1.0
CZ A:PHI23 4.9 106.7 1.0

Iodine binding site 3 out of 44 in 8izz

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Iodine binding site 3 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I23

b:101.8
occ:1.00
I B:PHI23 0.0 101.8 1.0
CZ B:PHI23 2.1 101.8 1.0
CE1 B:PHI23 3.0 101.8 1.0
CE2 B:PHI23 3.0 101.8 1.0
CE2 B:PHI29 4.3 97.5 1.0
CD1 B:PHI23 4.3 101.8 1.0
CD2 B:PHI23 4.3 101.8 1.0
OXT F:GLY30 4.8 81.2 1.0
CG B:PHI23 4.9 101.8 1.0
N B:GLY22 4.9 94.9 1.0
CD2 B:PHI29 4.9 97.5 1.0

Iodine binding site 4 out of 44 in 8izz

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Iodine binding site 4 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I29

b:97.5
occ:1.00
I B:PHI29 0.0 97.5 1.0
CZ B:PHI29 2.0 97.5 1.0
CE1 B:PHI29 3.0 97.5 1.0
CE2 B:PHI29 3.0 97.5 1.0
CD1 B:PHI29 4.3 97.5 1.0
CD2 B:PHI29 4.3 97.5 1.0
CG B:PHI29 4.8 97.5 1.0
CZ B:PHI23 4.9 101.8 1.0

Iodine binding site 5 out of 44 in 8izz

Go back to Iodine Binding Sites List in 8izz
Iodine binding site 5 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:I23

b:139.1
occ:1.00
I C:PHI23 0.0 139.1 1.0
CZ C:PHI23 2.0 139.1 1.0
CE2 C:PHI23 3.0 139.1 1.0
CE1 C:PHI23 3.0 139.1 1.0
CB E:PHI29 4.1 123.0 1.0
CD1 C:PHI23 4.3 139.1 1.0
CD2 C:PHI23 4.3 139.1 1.0
I C:PHI29 4.4 114.7 1.0
O E:PHI29 4.4 123.0 1.0
C E:PHI29 4.7 123.0 1.0
CG C:PHI23 4.8 139.1 1.0
CA E:PHI29 4.9 123.0 1.0

Iodine binding site 6 out of 44 in 8izz

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Iodine binding site 6 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:I29

b:114.7
occ:1.00
I C:PHI29 0.0 114.7 1.0
CZ C:PHI29 2.0 114.7 1.0
CE2 C:PHI29 3.0 114.7 1.0
CE1 C:PHI29 3.0 114.7 1.0
CE2 C:PHI23 4.2 139.1 1.0
CD2 C:PHI29 4.3 114.7 1.0
CD1 C:PHI29 4.3 114.7 1.0
CZ C:PHI23 4.4 139.1 1.0
I C:PHI23 4.4 139.1 1.0
CG C:PHI29 4.8 114.7 1.0
CD2 C:PHI23 4.9 139.1 1.0

Iodine binding site 7 out of 44 in 8izz

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Iodine binding site 7 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:I23

b:105.1
occ:1.00
I D:PHI23 0.0 105.1 1.0
CZ D:PHI23 2.1 105.1 1.0
CE1 D:PHI23 3.0 105.1 1.0
CE2 D:PHI23 3.0 105.1 1.0
CD1 D:PHI23 4.3 105.1 1.0
CD2 D:PHI23 4.3 105.1 1.0
O A:GLY30 4.5 85.9 1.0
CA A:GLY30 4.8 85.9 1.0
CG D:PHI23 4.9 105.1 1.0
N A:GLY30 4.9 85.9 1.0

Iodine binding site 8 out of 44 in 8izz

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Iodine binding site 8 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:I29

b:76.6
occ:1.00
I D:PHI29 0.0 76.6 1.0
CZ D:PHI29 2.0 76.6 1.0
CE1 D:PHI29 3.0 76.6 1.0
CE2 D:PHI29 3.0 76.6 1.0
O A:GLY30 3.8 85.9 1.0
CD2 D:PHI23 3.9 105.1 1.0
CE2 D:PHI23 4.1 105.1 1.0
CD1 D:PHI29 4.3 76.6 1.0
CD2 D:PHI29 4.3 76.6 1.0
CG D:PHI23 4.5 105.1 1.0
CZ D:PHI23 4.8 105.1 1.0
CG D:PHI29 4.8 76.6 1.0
C A:GLY30 4.9 85.9 1.0

Iodine binding site 9 out of 44 in 8izz

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Iodine binding site 9 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:I23

b:123.9
occ:1.00
I E:PHI23 0.0 123.9 1.0
CZ E:PHI23 2.0 123.9 1.0
CE1 E:PHI23 2.9 123.9 1.0
CE2 E:PHI23 3.0 123.9 1.0
O C:PHI29 3.2 114.7 1.0
C C:PHI29 3.8 114.7 1.0
C C:GLY30 4.0 109.9 1.0
OXT C:GLY30 4.1 109.9 1.0
I E:PHI29 4.1 123.0 1.0
CA C:GLY30 4.2 109.9 1.0
CD1 E:PHI23 4.3 123.9 1.0
CD2 E:PHI23 4.3 123.9 1.0
N C:GLY30 4.3 109.9 1.0
O C:GLY30 4.3 109.9 1.0
CB C:PHI29 4.3 114.7 1.0
CA C:PHI29 4.7 114.7 1.0
CG E:PHI23 4.8 123.9 1.0

Iodine binding site 10 out of 44 in 8izz

Go back to Iodine Binding Sites List in 8izz
Iodine binding site 10 out of 44 in the Cryo-Em Structure of Dip-2I8I Polymorph 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Cryo-Em Structure of Dip-2I8I Polymorph 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:I29

b:123.0
occ:1.00
I E:PHI29 0.0 123.0 1.0
CZ E:PHI29 2.0 123.0 1.0
CE2 E:PHI29 3.0 123.0 1.0
CE1 E:PHI29 3.0 123.0 1.0
CZ E:PHI23 3.8 123.9 1.0
CE1 E:PHI23 3.8 123.9 1.0
I E:PHI23 4.1 123.9 1.0
CD2 E:PHI29 4.3 123.0 1.0
CD1 E:PHI29 4.3 123.0 1.0
CE2 E:PHI23 4.3 123.9 1.0
CD1 E:PHI23 4.4 123.9 1.0
CB C:PHI29 4.7 114.7 1.0
CG E:PHI29 4.8 123.0 1.0
CD2 E:PHI23 4.8 123.9 1.0
CG E:PHI23 4.9 123.9 1.0

Reference:

D.N.Li, Y.Y.Ma, D.Li, B.Dai, C.Liu. Cryo-Em Structure of Dip-2I8I Fibril Polymorph 2 To Be Published.
Page generated: Mon Aug 12 02:53:12 2024

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