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Iodine in PDB 8ygq: Crystal Structure of Human TEAD2 in Complex with Cobimetinib

Protein crystallography data

The structure of Crystal Structure of Human TEAD2 in Complex with Cobimetinib, PDB code: 8ygq was solved by X.J.He, L.Q.Hu, M.Y.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.27 / 2.71
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 122.303, 61.774, 80.361, 90, 117.7, 90
R / Rfree (%) 19.1 / 25.7

Other elements in 8ygq:

The structure of Crystal Structure of Human TEAD2 in Complex with Cobimetinib also contains other interesting chemical elements:

Fluorine (F) 3 atoms

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of Human TEAD2 in Complex with Cobimetinib (pdb code 8ygq). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Crystal Structure of Human TEAD2 in Complex with Cobimetinib, PDB code: 8ygq:

Iodine binding site 1 out of 1 in 8ygq

Go back to Iodine Binding Sites List in 8ygq
Iodine binding site 1 out of 1 in the Crystal Structure of Human TEAD2 in Complex with Cobimetinib


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Human TEAD2 in Complex with Cobimetinib within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I501

b:103.9
occ:1.00
I8 B:EUI501 0.0 103.9 1.0
C2 B:EUI501 2.1 47.2 1.0
C3 B:EUI501 3.0 40.5 1.0
C1 B:EUI501 3.0 45.1 1.0
CD2 B:LEU387 3.4 30.8 1.0
CD2 B:LEU403 4.2 18.7 1.0
CB B:ALA304 4.3 28.8 1.0
C6 B:EUI501 4.3 51.6 1.0
C4 B:EUI501 4.3 39.2 1.0
CD2 B:LEU390 4.4 25.8 1.0
CD2 B:LEU306 4.5 32.5 1.0
CE2 B:PHE386 4.5 25.9 1.0
CD2 B:PHE428 4.6 22.7 1.0
CG B:LEU387 4.6 24.1 1.0
CD1 B:LEU403 4.7 28.1 1.0
CE1 B:PHE406 4.9 28.7 1.0
C5 B:EUI501 4.9 45.1 1.0
CD2 B:PHE386 4.9 21.7 1.0

Reference:

X.J.He, L.Q.Hu, M.Y.Wu. Crystal Structure of Human TEAD2 in Complex with Cobimetinib To Be Published.
Page generated: Sat Aug 9 00:38:32 2025

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