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Iodine in PDB 9e56: Tad From Carmabin Biosynthetic Pathway with Disulfide Between CYS2238 and Dephosphocoenzyme A - Crystal Form 2

Protein crystallography data

The structure of Tad From Carmabin Biosynthetic Pathway with Disulfide Between CYS2238 and Dephosphocoenzyme A - Crystal Form 2, PDB code: 9e56 was solved by M.R.Rankin, J.L.Smith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.74 / 1.94
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.82, 72.867, 211.227, 90, 90, 90
R / Rfree (%) 19.4 / 22.8

Iodine Binding Sites:

The binding sites of Iodine atom in the Tad From Carmabin Biosynthetic Pathway with Disulfide Between CYS2238 and Dephosphocoenzyme A - Crystal Form 2 (pdb code 9e56). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Tad From Carmabin Biosynthetic Pathway with Disulfide Between CYS2238 and Dephosphocoenzyme A - Crystal Form 2, PDB code: 9e56:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 9e56

Go back to Iodine Binding Sites List in 9e56
Iodine binding site 1 out of 2 in the Tad From Carmabin Biosynthetic Pathway with Disulfide Between CYS2238 and Dephosphocoenzyme A - Crystal Form 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Tad From Carmabin Biosynthetic Pathway with Disulfide Between CYS2238 and Dephosphocoenzyme A - Crystal Form 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I2402

b:44.5
occ:0.60
N A:MET2236 3.6 28.4 1.0
CE A:LYS1967 3.8 46.5 1.0
CB A:MET2236 3.9 29.2 1.0
CG1 A:ILE2235 4.1 33.7 1.0
CB A:ALA2239 4.3 29.6 1.0
CA A:MET2236 4.4 29.8 1.0
CA A:ILE2235 4.4 28.8 1.0
C A:ILE2235 4.5 27.2 1.0
CG A:LYS1967 4.6 37.7 1.0
CD A:LYS1967 4.7 42.1 1.0
CD1 A:ILE1976 4.7 30.2 1.0
NZ A:LYS1967 4.8 45.2 1.0
CE A:MET2236 4.9 38.8 1.0
CB A:ILE2235 4.9 31.0 1.0
CD1 A:ILE2235 5.0 37.1 1.0

Iodine binding site 2 out of 2 in 9e56

Go back to Iodine Binding Sites List in 9e56
Iodine binding site 2 out of 2 in the Tad From Carmabin Biosynthetic Pathway with Disulfide Between CYS2238 and Dephosphocoenzyme A - Crystal Form 2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Tad From Carmabin Biosynthetic Pathway with Disulfide Between CYS2238 and Dephosphocoenzyme A - Crystal Form 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I2402

b:50.2
occ:0.52
CE B:LYS1967 3.6 52.6 1.0
N B:MET2236 3.6 39.8 1.0
CB B:MET2236 3.8 42.6 1.0
CG1 B:ILE2235 4.1 43.8 1.0
CA B:MET2236 4.3 41.8 1.0
CB B:ALA2239 4.4 37.2 1.0
CA B:ILE2235 4.4 42.5 1.0
CD B:LYS1967 4.5 50.5 1.0
C B:ILE2235 4.5 42.9 1.0
NZ B:LYS1967 4.6 45.4 1.0
CD1 B:ILE1976 4.7 39.3 1.0
CE B:MET2236 4.8 53.9 1.0
CB B:ILE2235 4.9 42.5 1.0

Reference:

M.R.Rankin, J.L.Smith. Structure of A Putative Terminal Amidation Domain in Natural Product Biosynthesis To Be Published.
Page generated: Sat Aug 9 00:42:25 2025

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