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Iodine in PDB 1wcv: Structure of the Bacterial Chromosome Segregation Protein Soj

Protein crystallography data

The structure of Structure of the Bacterial Chromosome Segregation Protein Soj, PDB code: 1wcv was solved by T.A.Leonard, P.J.G.Butler, J.Lowe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 61.353, 61.353, 124.526, 90.00, 90.00, 90.00
R / Rfree (%) 22.9 / 25.2

Other elements in 1wcv:

The structure of Structure of the Bacterial Chromosome Segregation Protein Soj also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Iodine Binding Sites:

The binding sites of Iodine atom in the Structure of the Bacterial Chromosome Segregation Protein Soj (pdb code 1wcv). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 5 binding sites of Iodine where determined in the Structure of the Bacterial Chromosome Segregation Protein Soj, PDB code: 1wcv:
Jump to Iodine binding site number: 1; 2; 3; 4; 5;

Iodine binding site 1 out of 5 in 1wcv

Go back to Iodine Binding Sites List in 1wcv
Iodine binding site 1 out of 5 in the Structure of the Bacterial Chromosome Segregation Protein Soj


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Structure of the Bacterial Chromosome Segregation Protein Soj within 5.0Å range:
probe atom residue distance (Å) B Occ
1:I1250

b:21.6
occ:1.00
 O 1:HOH2203 3.3 23.0 1.0
O 1:HOH2195 3.7 24.0 1.0
CD2 1:HIS233 3.9 13.0 1.0
O 1:HOH2198 4.1 24.6 1.0
CG 1:HIS233 4.3 11.2 1.0
CA 1:PRO230 4.4 16.5 1.0
CB 1:HIS233 4.5 9.7 1.0
NE2 1:HIS233 4.7 12.6 1.0
CB 1:PRO230 4.8 18.7 1.0
CG 1:PRO230 4.8 17.2 1.0

Iodine binding site 2 out of 5 in 1wcv

Go back to Iodine Binding Sites List in 1wcv
Iodine binding site 2 out of 5 in the Structure of the Bacterial Chromosome Segregation Protein Soj


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Structure of the Bacterial Chromosome Segregation Protein Soj within 5.0Å range:
probe atom residue distance (Å) B Occ
1:I1251

b:22.3
occ:1.00
 OG1 1:THR157 3.3 16.4 1.0
NE2 1:GLN14 3.7 18.3 1.0
O 1:GLY153 4.0 16.3 1.0
C 1:GLY153 4.0 15.7 1.0
CG 1:GLN14 4.0 20.8 1.0
N 1:LEU154 4.0 12.1 1.0
CA 1:LEU154 4.0 15.2 1.0
CB 1:THR157 4.3 16.8 1.0
CD 1:GLN14 4.4 15.8 1.0
CD1 1:LEU154 4.4 31.1 1.0
O 1:HOH2007 4.6 44.4 1.0
CB 1:LEU154 4.7 19.7 1.0
CA 1:GLY153 4.7 14.8 1.0
CB 1:GLN14 4.7 20.6 1.0
CG2 1:THR157 4.9 15.3 1.0

Iodine binding site 3 out of 5 in 1wcv

Go back to Iodine Binding Sites List in 1wcv
Iodine binding site 3 out of 5 in the Structure of the Bacterial Chromosome Segregation Protein Soj


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Structure of the Bacterial Chromosome Segregation Protein Soj within 5.0Å range:
probe atom residue distance (Å) B Occ
1:I1252

b:29.3
occ:1.00
 O 1:HOH2117 3.3 20.4 1.0
O 1:HOH2108 3.3 32.1 1.0
CA 1:GLY150 4.0 17.6 1.0
CG1 1:VAL141 4.2 15.7 1.0
CE 1:LYS15 4.3 53.2 1.0
C 1:GLY150 4.3 16.4 1.0
N 1:GLN14 4.3 21.3 1.0
CB 1:GLN14 4.4 20.6 1.0
CE1 1:TYR146 4.4 28.1 1.0
CD1 1:TYR146 4.4 29.5 1.0
N 1:LYS15 4.5 28.5 1.0
CB 1:ASN13 4.5 18.7 1.0
CA 1:ALA147 4.5 17.4 1.0
CB 1:VAL141 4.6 13.7 1.0
N 1:VAL151 4.7 13.5 1.0
O 1:GLY150 4.8 15.6 1.0
CA 1:GLN14 4.9 23.7 1.0
CG 1:LYS15 4.9 45.7 1.0
CB 1:LYS15 5.0 39.6 1.0

Iodine binding site 4 out of 5 in 1wcv

Go back to Iodine Binding Sites List in 1wcv
Iodine binding site 4 out of 5 in the Structure of the Bacterial Chromosome Segregation Protein Soj


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Structure of the Bacterial Chromosome Segregation Protein Soj within 5.0Å range:
probe atom residue distance (Å) B Occ
1:I1253

b:30.6
occ:1.00
 O 1:HOH2020 3.0 31.3 1.0
O 1:HOH2171 3.6 75.5 1.0
O 1:HOH2170 3.6 16.8 1.0
N 1:ASN209 3.8 18.6 1.0
O 1:ASN209 3.8 20.5 1.0
CA 1:ARG208 4.0 21.5 1.0
N 1:ALA213 4.1 21.0 1.0
CB 1:ALA213 4.1 20.7 1.0
CD2 1:LEU212 4.2 20.5 1.0
CA 1:ALA213 4.2 19.7 1.0
CG 1:ARG208 4.2 39.7 1.0
CE 1:MET178 4.3 40.5 1.0
CB 1:LEU212 4.4 18.9 1.0
C 1:ARG208 4.4 18.9 1.0
CG 1:MET178 4.4 29.2 1.0
O 1:PRO207 4.5 17.6 1.0
CG 1:LEU212 4.5 21.8 1.0
C 1:LEU212 4.6 17.6 1.0
O 1:HOH2019 4.6 24.6 1.0
C 1:ASN209 4.7 20.5 1.0
CB 1:ARG208 4.7 25.4 1.0
O 1:HOH2199 4.7 28.2 1.0
CA 1:ASN209 4.8 21.1 1.0
NH1 1:ARG208 4.9 62.2 1.0
CA 1:MET178 5.0 18.3 1.0

Iodine binding site 5 out of 5 in 1wcv

Go back to Iodine Binding Sites List in 1wcv
Iodine binding site 5 out of 5 in the Structure of the Bacterial Chromosome Segregation Protein Soj


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Structure of the Bacterial Chromosome Segregation Protein Soj within 5.0Å range:
probe atom residue distance (Å) B Occ
1:I1254

b:30.4
occ:1.00
 CD1 1:LEU165 3.4 38.7 1.0
O 1:HOH2123 3.7 36.8 1.0
O 1:GLU160 4.2 17.4 1.0
CA 1:GLY164 4.6 24.9 1.0
CG 1:LEU165 4.6 32.8 1.0
CD2 1:LEU165 4.7 32.1 1.0
C 1:GLU160 4.9 18.7 1.0
C 1:GLY164 4.9 24.9 1.0

Reference:

T.A.Leonard, P.J.G.Butler, J.Lowe. Bacterial Chromosome Segregation: Structure and Dna Binding of the Soj Dimer--A Conserved Biological Switch Embo J. V. 24 270 2005.
ISSN: ISSN 0261-4189
PubMed: 15635448
DOI: 10.1038/SJ.EMBOJ.7600530
Page generated: Fri Aug 8 12:30:24 2025

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