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Iodine in PDB 2zp1: Structual Basis of Iodo-Tyrosine Recognition By Engineered Archeal Tyrosyl-Trna Synthetase

Enzymatic activity of Structual Basis of Iodo-Tyrosine Recognition By Engineered Archeal Tyrosyl-Trna Synthetase

All present enzymatic activity of Structual Basis of Iodo-Tyrosine Recognition By Engineered Archeal Tyrosyl-Trna Synthetase:
6.1.1.1;

Protein crystallography data

The structure of Structual Basis of Iodo-Tyrosine Recognition By Engineered Archeal Tyrosyl-Trna Synthetase, PDB code: 2zp1 was solved by K.Oki, T.Kobayashi, K.Sakamoto, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.65 / 1.70
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 102.201, 102.201, 71.904, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 22

Iodine Binding Sites:

The binding sites of Iodine atom in the Structual Basis of Iodo-Tyrosine Recognition By Engineered Archeal Tyrosyl-Trna Synthetase (pdb code 2zp1). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Structual Basis of Iodo-Tyrosine Recognition By Engineered Archeal Tyrosyl-Trna Synthetase, PDB code: 2zp1:

Iodine binding site 1 out of 1 in 2zp1

Go back to Iodine Binding Sites List in 2zp1
Iodine binding site 1 out of 1 in the Structual Basis of Iodo-Tyrosine Recognition By Engineered Archeal Tyrosyl-Trna Synthetase


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Structual Basis of Iodo-Tyrosine Recognition By Engineered Archeal Tyrosyl-Trna Synthetase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I501

b:26.0
occ:1.00
 IE A:IYR501 0.0 26.0 1.0
CE A:IYR501 2.1 21.7 1.0
CD A:IYR501 3.0 22.5 1.0
CF A:IYR501 3.0 22.3 1.0
OF A:IYR501 3.2 22.8 1.0
OE1 A:GLN109 3.5 29.5 1.0
OG1 A:THR158 3.6 22.1 1.0
CA A:GLN155 3.7 17.2 1.0
O A:HOH705 3.7 19.4 1.0
N A:GLN155 3.9 17.1 1.0
CB A:GLN155 4.0 20.4 1.0
CB A:ALA70 4.0 23.2 1.0
CG A:MET154 4.1 36.1 1.0
CD2 A:LEU65 4.2 24.1 1.0
C A:MET154 4.2 20.0 1.0
O A:MET154 4.2 18.3 1.0
CC A:IYR501 4.3 21.5 1.0
CG A:IYR501 4.4 17.1 1.0
CD A:GLN109 4.4 22.2 1.0
CG A:GLN155 4.4 19.1 1.0
NE2 A:GLN109 4.5 17.3 1.0
SD A:MET154 4.5 41.8 1.0
CB A:MET154 4.7 22.6 1.0
CH A:IYR501 4.9 21.6 1.0
CB A:ALA67 4.9 21.2 1.0
OE1 A:GLN155 4.9 23.5 1.0
CB A:THR158 4.9 24.8 1.0
C A:GLN155 5.0 20.4 1.0

Reference:

K.Oki, T.Kobayashi, K.Sakamoto, S.Yokoyama. Structual Basis of Iodo-Tyrosine Recognition By Engineered Archeal Tyrosyl-Trna Synthetase To Be Published.
Page generated: Sun Aug 11 14:39:47 2024

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