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Iodine in PDB 3zzz: Crystal Structure of A RAVER1 PRI4 Peptide in Complex with Polypyrimidine Tract Binding Protein RRM2

Protein crystallography data

The structure of Crystal Structure of A RAVER1 PRI4 Peptide in Complex with Polypyrimidine Tract Binding Protein RRM2, PDB code: 3zzz was solved by A.Joshi, O.Kotik-Kogan, S.Curry, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.07 / 1.55
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 74.480, 60.380, 61.060, 90.00, 107.86, 90.00
R / Rfree (%) 21.7 / 22.4

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of A RAVER1 PRI4 Peptide in Complex with Polypyrimidine Tract Binding Protein RRM2 (pdb code 3zzz). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 5 binding sites of Iodine where determined in the Crystal Structure of A RAVER1 PRI4 Peptide in Complex with Polypyrimidine Tract Binding Protein RRM2, PDB code: 3zzz:
Jump to Iodine binding site number: 1; 2; 3; 4; 5;

Iodine binding site 1 out of 5 in 3zzz

Go back to Iodine Binding Sites List in 3zzz
Iodine binding site 1 out of 5 in the Crystal Structure of A RAVER1 PRI4 Peptide in Complex with Polypyrimidine Tract Binding Protein RRM2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of A RAVER1 PRI4 Peptide in Complex with Polypyrimidine Tract Binding Protein RRM2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I1285

b:41.5
occ:0.50
N A:LYS259 3.3 15.3 1.0
I A:IOD1286 3.5 33.2 0.5
CB A:LYS259 3.7 16.2 1.0
CG A:LYS259 3.8 15.5 1.0
CA A:SER258 4.1 14.1 1.0
CA A:LYS259 4.1 15.7 1.0
C A:SER258 4.1 14.3 1.0
CD A:LYS259 4.3 17.8 1.0
OG A:SER258 4.4 15.7 1.0
O A:PHE257 4.7 15.6 1.0
CB A:SER258 4.8 14.2 1.0
CE A:LYS259 4.9 19.9 1.0

Iodine binding site 2 out of 5 in 3zzz

Go back to Iodine Binding Sites List in 3zzz
Iodine binding site 2 out of 5 in the Crystal Structure of A RAVER1 PRI4 Peptide in Complex with Polypyrimidine Tract Binding Protein RRM2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of A RAVER1 PRI4 Peptide in Complex with Polypyrimidine Tract Binding Protein RRM2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I1286

b:33.2
occ:0.50
I A:IOD1288 3.3 42.5 0.5
OG A:SER258 3.3 15.7 1.0
I A:IOD1285 3.5 41.5 0.5
CB A:SER258 3.9 14.2 1.0
CD2 A:LEU225 4.1 12.8 1.0
CA A:SER258 4.4 14.1 1.0
CG A:ARG185 4.5 18.4 1.0
CB A:ARG185 4.5 12.9 1.0
CD1 A:LEU260 4.7 17.5 1.0
N A:LYS259 4.8 15.3 1.0
CG A:LEU260 5.0 16.8 1.0

Iodine binding site 3 out of 5 in 3zzz

Go back to Iodine Binding Sites List in 3zzz
Iodine binding site 3 out of 5 in the Crystal Structure of A RAVER1 PRI4 Peptide in Complex with Polypyrimidine Tract Binding Protein RRM2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of A RAVER1 PRI4 Peptide in Complex with Polypyrimidine Tract Binding Protein RRM2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I1287

b:42.6
occ:0.50
N A:LYS266 3.3 16.9 1.0
OG A:SER272 3.3 19.3 1.0
N A:TYR267 3.7 17.7 1.0
CB A:SER272 3.7 15.5 1.0
CB A:LYS266 3.9 21.4 1.0
O A:HOH2064 4.0 31.9 1.0
CA A:LYS266 4.0 18.0 1.0
CA A:VAL265 4.2 14.8 1.0
C A:VAL265 4.2 14.5 1.0
CG1 A:VAL265 4.2 16.8 1.0
C A:LYS266 4.4 17.3 1.0
CD2 A:TYR267 4.4 26.7 1.0
CG A:LYS266 4.5 23.7 1.0
O A:TYR267 4.5 16.2 1.0
CA A:TYR267 4.7 16.9 1.0
CB A:TYR267 4.7 20.1 1.0
CB A:VAL265 4.8 14.1 1.0
O A:ASN264 4.9 19.8 1.0
CG A:TYR267 4.9 22.9 1.0

Iodine binding site 4 out of 5 in 3zzz

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Iodine binding site 4 out of 5 in the Crystal Structure of A RAVER1 PRI4 Peptide in Complex with Polypyrimidine Tract Binding Protein RRM2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of A RAVER1 PRI4 Peptide in Complex with Polypyrimidine Tract Binding Protein RRM2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I1288

b:42.5
occ:0.50
I A:IOD1286 3.3 33.2 0.5
CZ A:PHE216 4.3 25.1 1.0
CD1 A:LEU225 4.3 14.0 1.0
CD2 A:LEU225 4.5 12.8 1.0
CG A:LEU225 4.7 12.7 1.0
CE1 A:PHE216 4.9 24.4 1.0
CE2 A:PHE216 5.0 23.9 1.0

Iodine binding site 5 out of 5 in 3zzz

Go back to Iodine Binding Sites List in 3zzz
Iodine binding site 5 out of 5 in the Crystal Structure of A RAVER1 PRI4 Peptide in Complex with Polypyrimidine Tract Binding Protein RRM2


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of A RAVER1 PRI4 Peptide in Complex with Polypyrimidine Tract Binding Protein RRM2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:I1689

b:29.7
occ:0.50
CD2 D:LEU688 3.7 45.4 1.0
CG D:LEU688 3.9 45.4 1.0
O D:LEU688 4.0 46.2 1.0
CB D:LEU688 4.3 45.6 1.0
C D:LEU688 4.6 45.6 1.0

Reference:

A.Joshi, M.B.Coelho, O.Kotik-Kogan, P.J.Simpson, S.J.Matthews, C.W.Smith, S.Curry. Crystallographic Analysis of Polypyrimidine Tract-Binding Protein-RAVER1 Interactions Involved in Regulation of Alternative Splicing. Structure V. 19 1816 2011.
ISSN: ISSN 0969-2126
PubMed: 22153504
DOI: 10.1016/J.STR.2011.09.020
Page generated: Sun Aug 11 17:15:23 2024

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