Atomistry » Iodine » PDB 6njv-6rq8 » 6o43
Atomistry »
  Iodine »
    PDB 6njv-6rq8 »
      6o43 »

Iodine in PDB 6o43: Crystal Structure of A Lysin Protein From Staphylococcus Phage P68

Protein crystallography data

The structure of Crystal Structure of A Lysin Protein From Staphylococcus Phage P68, PDB code: 6o43 was solved by J.Q.Truong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.73 / 2.08
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 61.397, 61.397, 101.606, 90.00, 90.00, 120.00
R / Rfree (%) 17.9 / 22.4

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of A Lysin Protein From Staphylococcus Phage P68 (pdb code 6o43). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 3 binding sites of Iodine where determined in the Crystal Structure of A Lysin Protein From Staphylococcus Phage P68, PDB code: 6o43:
Jump to Iodine binding site number: 1; 2; 3;

Iodine binding site 1 out of 3 in 6o43

Go back to Iodine Binding Sites List in 6o43
Iodine binding site 1 out of 3 in the Crystal Structure of A Lysin Protein From Staphylococcus Phage P68


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of A Lysin Protein From Staphylococcus Phage P68 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I301

b:83.8
occ:0.52
I3 A:I3C301 0.0 83.8 0.5
C6 A:I3C301 2.1 89.8 0.5
C5 A:I3C301 3.0 89.3 0.5
C1 A:I3C301 3.1 92.1 0.5
N13 A:I3C301 3.2 88.1 0.5
O A:ARG93 3.2 50.7 1.0
HN1A A:I3C301 3.3 0.7 0.5
C7 A:I3C301 3.3 92.8 0.5
HN13 A:I3C301 3.5 0.7 0.5
O9 A:I3C301 3.6 91.7 0.5
O A:GLY94 3.6 61.6 1.0
C A:GLY94 3.7 55.2 1.0
N A:ASP95 3.8 53.0 1.0
CA A:ASP95 3.8 54.5 1.0
O8 A:I3C301 3.9 91.5 0.5
CZ2 A:TRP46 4.0 39.4 1.0
C A:ASP95 4.0 52.5 1.0
CH2 A:TRP46 4.1 37.8 1.0
C A:ARG93 4.3 60.5 1.0
CE2 A:TRP46 4.3 47.7 1.0
C4 A:I3C301 4.3 92.5 0.5
C2 A:I3C301 4.4 91.4 0.5
N A:TYR96 4.4 44.8 1.0
CA A:GLY94 4.4 63.2 1.0
O A:ASP95 4.5 47.9 1.0
CZ3 A:TRP46 4.6 40.9 1.0
CB A:ALA92 4.6 55.3 1.0
N A:GLY94 4.7 55.5 1.0
CD2 A:TRP46 4.8 45.9 1.0
C3 A:I3C301 4.9 93.5 0.5
NE1 A:TRP46 4.9 41.2 1.0
CE3 A:TRP46 4.9 36.7 1.0

Iodine binding site 2 out of 3 in 6o43

Go back to Iodine Binding Sites List in 6o43
Iodine binding site 2 out of 3 in the Crystal Structure of A Lysin Protein From Staphylococcus Phage P68


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of A Lysin Protein From Staphylococcus Phage P68 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I301

b:90.8
occ:0.52
I2 A:I3C301 0.0 90.8 0.5
C4 A:I3C301 2.1 92.5 0.5
C3 A:I3C301 3.0 93.5 0.5
C5 A:I3C301 3.0 89.3 0.5
O A:TRP46 3.0 46.4 1.0
C10 A:I3C301 3.2 92.5 0.5
N13 A:I3C301 3.2 88.1 0.5
HN13 A:I3C301 3.3 0.7 0.5
HN1A A:I3C301 3.6 0.7 0.5
O12 A:I3C301 3.6 91.9 0.5
O11 A:I3C301 3.7 90.3 0.5
CA A:TRP46 3.8 44.5 1.0
C A:TRP46 3.8 49.6 1.0
O A:HOH467 3.9 57.0 1.0
CB A:TRP46 4.1 38.0 1.0
CG A:TRP46 4.3 45.1 1.0
C6 A:I3C301 4.4 89.8 0.5
C2 A:I3C301 4.4 91.4 0.5
CD1 A:TRP46 4.4 42.4 1.0
O A:VAL45 4.8 45.7 1.0
C1 A:I3C301 4.9 92.1 0.5

Iodine binding site 3 out of 3 in 6o43

Go back to Iodine Binding Sites List in 6o43
Iodine binding site 3 out of 3 in the Crystal Structure of A Lysin Protein From Staphylococcus Phage P68


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of A Lysin Protein From Staphylococcus Phage P68 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I301

b:88.5
occ:0.52
I1 A:I3C301 0.0 88.5 0.5
C2 A:I3C301 2.1 91.4 0.5
C1 A:I3C301 3.0 92.1 0.5
C3 A:I3C301 3.1 93.5 0.5
C7 A:I3C301 3.2 92.8 0.5
C10 A:I3C301 3.3 92.5 0.5
O8 A:I3C301 3.5 91.5 0.5
O A:HOH441 3.6 50.4 1.0
O11 A:I3C301 3.7 90.3 0.5
O12 A:I3C301 3.8 91.9 0.5
O9 A:I3C301 3.8 91.7 0.5
C6 A:I3C301 4.4 89.8 0.5
C4 A:I3C301 4.4 92.5 0.5
C5 A:I3C301 4.9 89.3 0.5

Reference:

J.Q.Truong, S.Panjikar, L.Shearwin-Whyatt, J.B.Bruning, K.E.Shearwin. Combining Random Microseed Matrix Screening and the Magic Triangle For the Efficient Structure Solution of A Potential Lysin From Bacteriophage P68. Acta Crystallogr D Struct V. 75 670 2019BIOL.
ISSN: ISSN 2059-7983
PubMed: 31282476
DOI: 10.1107/S2059798319009008
Page generated: Sun Aug 11 23:47:36 2024

Last articles

F in 8FA0
F in 8F9Z
F in 8F9D
F in 8F9C
F in 8F9B
F in 8F9A
F in 8F99
F in 8F98
F in 8F97
F in 8F96
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy