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Iodine in PDB 6ogb: Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- I1Y), H148D; Circular Permutant (50-51)

Protein crystallography data

The structure of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- I1Y), H148D; Circular Permutant (50-51), PDB code: 6ogb was solved by C.-Y.Lin, S.G.Boxer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.18 / 1.65
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.810, 68.690, 61.640, 90.00, 99.76, 90.00
R / Rfree (%) 15.6 / 17.8

Iodine Binding Sites:

The binding sites of Iodine atom in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- I1Y), H148D; Circular Permutant (50-51) (pdb code 6ogb). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 2 binding sites of Iodine where determined in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- I1Y), H148D; Circular Permutant (50-51), PDB code: 6ogb:
Jump to Iodine binding site number: 1; 2;

Iodine binding site 1 out of 2 in 6ogb

Go back to Iodine Binding Sites List in 6ogb
Iodine binding site 1 out of 2 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- I1Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- I1Y), H148D; Circular Permutant (50-51) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I15

b:22.1
occ:1.00
I A:I1C15 0.0 22.1 1.0
CE1 A:I1C15 2.1 19.5 1.0
OG1 A:THR155 2.9 20.8 1.0
CD1 A:I1C15 3.0 18.6 1.0
CZ A:I1C15 3.1 20.6 1.0
OH A:I1C15 3.2 22.5 1.0
OE2 A:GLU172 3.7 28.9 1.0
O A:HOH444 3.8 17.4 1.0
CE2 A:PHE95 3.8 23.7 1.0
CD A:GLU172 3.9 31.7 1.0
OG1 A:THR153 3.9 17.3 1.0
OE1 A:GLU172 3.9 34.4 1.0
CB A:THR153 3.9 18.3 1.0
CD2 A:PHE95 4.1 22.9 1.0
CG1 A:VAL11 4.2 16.7 1.0
CB A:THR155 4.2 17.0 1.0
CG2 A:I1C15 4.4 21.4 1.0
CE2 A:I1C15 4.4 20.8 1.0
CB A:GLU172 4.4 25.7 1.0
CG2 A:THR153 4.5 18.9 1.0
CG2 A:THR155 4.6 16.9 1.0
CG A:GLU172 4.7 37.9 1.0
CZ A:PHE95 4.8 23.7 1.0
OG1 A:I1C15 4.8 21.3 1.0
CD2 A:I1C15 4.9 19.9 1.0

Iodine binding site 2 out of 2 in 6ogb

Go back to Iodine Binding Sites List in 6ogb
Iodine binding site 2 out of 2 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- I1Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- I1Y), H148D; Circular Permutant (50-51) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I15

b:23.6
occ:1.00
I B:I1C15 0.0 23.6 1.0
CE1 B:I1C15 2.1 20.4 1.0
OG1 B:THR155 2.9 23.0 1.0
CD1 B:I1C15 3.0 22.3 1.0
CZ B:I1C15 3.0 23.8 1.0
OH B:I1C15 3.2 26.6 1.0
OE1 B:GLU172 3.7 30.6 1.0
CE2 B:PHE95 3.8 28.7 1.0
O B:HOH463 3.8 18.0 1.0
CD B:GLU172 3.9 32.7 1.0
OG1 B:THR153 3.9 17.8 1.0
CB B:THR153 3.9 17.6 1.0
OE2 B:GLU172 3.9 31.0 1.0
CD2 B:PHE95 4.1 24.4 1.0
CB B:THR155 4.2 19.4 1.0
CG1 B:VAL11 4.3 18.0 1.0
CG2 B:THR153 4.4 19.0 1.0
CG2 B:I1C15 4.4 21.1 1.0
CE2 B:I1C15 4.4 22.2 1.0
CB B:GLU172 4.5 32.3 1.0
CG2 B:THR155 4.6 17.6 1.0
CZ B:PHE95 4.7 21.9 1.0
CG B:GLU172 4.7 38.5 1.0
O B:HOH403 4.8 33.3 1.0
OG1 B:I1C15 4.9 20.2 1.0
CD2 B:I1C15 4.9 21.4 1.0

Reference:

C.-Y.Lin, A.Deng, S.G.Boxer. Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3-I1Y), H148D; Circular Permutant (50-51) To Be Published.
Page generated: Sun Aug 11 23:48:55 2024

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