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Iodine in PDB 6rzm: Galectin-3C in Complex with Trifluoroaryltriazole Monothiogalactoside Derivative:5(Iodine)

Protein crystallography data

The structure of Galectin-3C in Complex with Trifluoroaryltriazole Monothiogalactoside Derivative:5(Iodine), PDB code: 6rzm was solved by R.Kumar, M.L.Verteramo, U.J.Nilsson, D.T.Logan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.62 / 1.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 36.070, 57.238, 61.655, 90.00, 90.00, 90.00
R / Rfree (%) 15.3 / 18.8

Other elements in 6rzm:

The structure of Galectin-3C in Complex with Trifluoroaryltriazole Monothiogalactoside Derivative:5(Iodine) also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Chlorine (Cl) 1 atom

Iodine Binding Sites:

The binding sites of Iodine atom in the Galectin-3C in Complex with Trifluoroaryltriazole Monothiogalactoside Derivative:5(Iodine) (pdb code 6rzm). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Galectin-3C in Complex with Trifluoroaryltriazole Monothiogalactoside Derivative:5(Iodine), PDB code: 6rzm:

Iodine binding site 1 out of 1 in 6rzm

Go back to Iodine Binding Sites List in 6rzm
Iodine binding site 1 out of 1 in the Galectin-3C in Complex with Trifluoroaryltriazole Monothiogalactoside Derivative:5(Iodine)


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Galectin-3C in Complex with Trifluoroaryltriazole Monothiogalactoside Derivative:5(Iodine) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I301

b:26.8
occ:1.00
I1 A:KON301 0.0 26.8 1.0
C4 A:KON301 2.1 28.0 1.0
C5 A:KON301 3.0 25.0 1.0
C1 A:KON301 3.0 29.1 1.0
HG3 A:GLU184 3.2 25.2 1.0
O A:GLY182 3.2 20.1 1.0
HD21 A:ASN174 3.3 20.2 1.0
HB3 A:TRP181 3.6 23.0 1.0
HD22 A:ASN174 3.8 20.2 1.0
HB2 A:TRP181 3.8 23.0 1.0
ND2 A:ASN174 3.9 16.8 1.0
O2 A:KON301 3.9 18.6 1.0
CG A:GLU184 4.1 21.0 1.0
OE2 A:GLU184 4.1 21.5 1.0
CB A:TRP181 4.2 19.1 1.0
O A:HOH504 4.3 35.3 1.0
CD A:GLU184 4.3 21.4 1.0
C6 A:KON301 4.3 24.8 1.0
C2 A:KON301 4.3 28.5 1.0
HG2 A:GLU184 4.4 25.2 1.0
C A:GLY182 4.5 19.8 1.0
O A:HOH548 4.5 49.0 1.0
H A:GLU184 4.6 21.7 1.0
HA A:ARG183 4.7 24.4 1.0
C A:TRP181 4.8 19.6 1.0
O A:TRP181 4.8 21.0 1.0
C3 A:KON301 4.9 27.5 1.0

Reference:

M.L.Verteramo, F.Zetterberg, R.Kumar, J.Wallerstein, M.M.Ignjatovic, H.Leffler, U.Ryde, D.T.Logan, M.Akke, U.J.Nilsson. Thermodynamic Studies of Halogen-Bond Interactions in Galectin-3 To Be Published.
Page generated: Mon Aug 12 00:14:11 2024

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