Iodine in PDB 7sdu: [Iu:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice

The structure of [Iu:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdu was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.49 / 4.33
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	105.102, 105.102, 93.232, 90, 90, 120
R / Rfree (%)	29.6 / 32.3

The structure of [Iu:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice also contains other interesting chemical elements:

Silver

(Ag)

1 atom

The binding sites of Iodine atom in the [Iu:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice (pdb code 7sdu). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the [Iu:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdu:

Iodine binding site 1 out of 1 in the [Iu:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of [Iu:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice within 5.0Å range: probe atom residue distance (Å) B Occ A:I12 b:362.8 occ:1.00 I5 A:5IU12 0.0 362.8 1.0 C5 A:5IU12 2.1 353.7 1.0 C4 A:5IU12 3.1 352.6 1.0 C6 A:5IU12 3.1 350.6 1.0 O4 A:5IU12 3.3 357.7 1.0 C2' A:DT11 3.6 334.9 1.0 C6 A:DT11 4.0 349.7 1.0 N1 A:DT11 4.1 346.9 1.0 C7 A:DT13 4.2 344.2 1.0 OP1 A:5IU12 4.2 398.1 1.0 O4 A:DT13 4.3 340.4 1.0 N3 A:5IU12 4.3 347.1 1.0 N1 A:5IU12 4.4 347.1 1.0 C1' A:DT11 4.4 346.1 1.0 C5 A:DT11 4.4 343.0 1.0 C2 A:DT11 4.5 329.8 1.0 N3 A:DT11 4.8 318.2 1.0 C4 A:DT11 4.8 326.2 1.0 C2 A:5IU12 4.8 343.7 1.0 C4 A:DT13 5.0 337.4 1.0 O2 A:DT11 5.0 344.7 1.0

S.Vecchioni, B.Lu, R.Sha, Y.P.Ohayon, J.Yoder, K.Woloszyn, W.Bernfeld, W.Hendrickson, L.Rothschild, C.Mao, S.Wind, N.C.Seeman. Metal-Mediated Dna Nanotechnology in 3D: Reengineering the Semantomorphic Alphabet To Be Published.