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Iodine in PDB 8dgs: Cryo-Em Structure of A Ras/Raf Complex (State 1)

Enzymatic activity of Cryo-Em Structure of A Ras/Raf Complex (State 1)

All present enzymatic activity of Cryo-Em Structure of A Ras/Raf Complex (State 1):
2.7.11.1; 2.7.12.2;

Other elements in 8dgs:

The structure of Cryo-Em Structure of A Ras/Raf Complex (State 1) also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Fluorine (F) 1 atom
Magnesium (Mg) 2 atoms

Iodine Binding Sites:

The binding sites of Iodine atom in the Cryo-Em Structure of A Ras/Raf Complex (State 1) (pdb code 8dgs). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total only one binding site of Iodine was determined in the Cryo-Em Structure of A Ras/Raf Complex (State 1), PDB code: 8dgs:

Iodine binding site 1 out of 1 in 8dgs

Go back to Iodine Binding Sites List in 8dgs
Iodine binding site 1 out of 1 in the Cryo-Em Structure of A Ras/Raf Complex (State 1)


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Cryo-Em Structure of A Ras/Raf Complex (State 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I803

b:239.3
occ:1.00
I01 B:LCJ803 0.0 239.3 1.0
C23 B:LCJ803 2.1 239.3 1.0
C22 B:LCJ803 2.9 239.3 1.0
C21 B:LCJ803 3.2 239.3 1.0
CE2 B:PHE209 3.6 236.3 1.0
O B:VAL127 3.7 227.9 1.0
SG B:CYS207 3.7 251.2 0.3
CZ B:PHE209 3.9 236.3 1.0
CB B:CYS207 4.1 251.2 0.7
CB B:VAL127 4.2 227.9 1.0
CB B:CYS207 4.2 251.2 0.3
C20 B:LCJ803 4.2 239.3 1.0
CA B:CYS207 4.4 251.2 0.7
CA B:CYS207 4.4 251.2 0.3
C19 B:LCJ803 4.5 239.3 1.0
CG1 B:VAL127 4.5 227.9 1.0
C B:VAL127 4.5 227.9 1.0
CD2 B:PHE209 4.6 236.3 1.0
O B:LEU206 4.7 245.6 1.0
N B:ASP208 4.8 248.4 1.0
CA B:VAL127 4.8 227.9 1.0
C17 B:LCJ803 4.8 239.3 1.0
CB B:MET143 4.9 259.6 1.0
SD B:MET143 4.9 259.6 1.0
CB B:PHE129 4.9 245.4 1.0
O B:GLY128 5.0 244.9 1.0

Reference:

M.J.Eck, H.Jeon, E.Park, S.Rawson. Cryo-Em Structure of A Ras/Raf Complex To Be Published.
Page generated: Sat Aug 9 00:08:08 2025

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