Atomistry » Iodine » PDB 1a31-1ga5 » 1eta
Atomistry »
  Iodine »
    PDB 1a31-1ga5 »
      1eta »

Iodine in PDB 1eta: The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution

Protein crystallography data

The structure of The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution, PDB code: 1eta was solved by B.C.Braden, L.K.Steinrauf, J.A.Hamilton, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 5.00 / 1.70
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 43.640, 86.180, 65.600, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Iodine Binding Sites:

The binding sites of Iodine atom in the The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution (pdb code 1eta). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 8 binding sites of Iodine where determined in the The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution, PDB code: 1eta:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iodine binding site 1 out of 8 in 1eta

Go back to Iodine Binding Sites List in 1eta
Iodine binding site 1 out of 8 in the The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
1:I128

b:37.4
occ:0.13
 I3 1:T44128 0.0 37.4 0.1
C3 1:T44128 2.1 35.0 0.1
C2 1:T44128 2.9 35.0 0.1
C4 1:T44128 3.1 35.0 0.1
O4 1:T44128 3.3 35.0 0.1
C1' 1:T44128 3.7 35.0 0.1
C6' 1:T44128 4.1 35.0 0.1
C1 1:T44128 4.3 35.0 0.1
C5 1:T44128 4.3 35.0 0.1
C2' 1:T44128 4.5 35.0 0.1
CD1 1:LEU17 4.6 16.0 1.0
C6 1:T44128 4.8 35.0 0.1
CE 1:LYS15 4.9 25.2 1.0
NZ 1:LYS15 5.0 26.2 0.8

Iodine binding site 2 out of 8 in 1eta

Go back to Iodine Binding Sites List in 1eta
Iodine binding site 2 out of 8 in the The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
1:I128

b:32.4
occ:0.13
 I3' 1:T44128 0.0 32.4 0.1
C3' 1:T44128 2.1 35.0 0.1
C2' 1:T44128 3.0 35.0 0.1
C4' 1:T44128 3.0 35.0 0.1
O4' 1:T44128 3.2 35.0 0.1
C5' 1:T44128 4.3 35.0 0.1
C1' 1:T44128 4.3 35.0 0.1
C6' 1:T44128 4.7 35.0 0.1

Iodine binding site 3 out of 8 in 1eta

Go back to Iodine Binding Sites List in 1eta
Iodine binding site 3 out of 8 in the The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
1:I128

b:37.2
occ:0.13
 I5 1:T44128 0.0 37.2 0.1
C5 1:T44128 2.1 35.0 0.1
C6 1:T44128 3.0 35.0 0.1
C4 1:T44128 3.1 35.0 0.1
O4 1:T44128 3.3 35.0 0.1
CB 1:ALA108 3.8 19.6 1.0
C1' 1:T44128 3.8 35.0 0.1
C6' 1:T44128 4.0 35.0 0.1
CG2 1:THR106 4.1 22.0 1.0
CG2 1:VAL121 4.1 20.5 1.0
C1 1:T44128 4.3 35.0 0.1
C3 1:T44128 4.3 35.0 0.1
C2 1:T44128 4.8 35.0 0.1
C2' 1:T44128 4.9 35.0 0.1

Iodine binding site 4 out of 8 in 1eta

Go back to Iodine Binding Sites List in 1eta
Iodine binding site 4 out of 8 in the The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
1:I128

b:25.0
occ:0.13
 I5' 1:T44128 0.0 25.0 0.1
C5' 1:T44128 2.0 35.0 0.1
C6' 1:T44128 2.9 35.0 0.1
C4' 1:T44128 3.0 35.0 0.1
O 1:ALA109 3.1 16.5 1.0
O4' 1:T44128 3.3 35.0 0.1
CG 1:LEU17 3.3 17.6 1.0
CB 1:ALA108 3.6 19.6 1.0
C 1:ALA109 3.7 16.6 1.0
N 1:ALA109 3.7 17.4 1.0
CB 1:LEU17 3.7 17.4 1.0
O 1:LYS15 3.8 18.6 1.0
CD1 1:LEU17 3.8 16.0 1.0
N 1:LEU17 4.1 16.7 1.0
CG 1:LYS15 4.2 23.3 1.0
C 1:ALA108 4.2 18.4 1.0
C1' 1:T44128 4.2 35.0 0.1
CA 1:ALA108 4.2 18.5 1.0
C3' 1:T44128 4.3 35.0 0.1
N 1:LEU110 4.3 16.2 1.0
CA 1:ALA109 4.3 16.8 1.0
C 1:LYS15 4.5 18.9 1.0
CA 1:LEU110 4.6 15.4 1.0
CD2 1:LEU17 4.6 18.1 1.0
CA 1:LEU17 4.6 16.5 1.0
C 1:VAL16 4.6 16.7 1.0
CB 1:LEU110 4.6 15.6 1.0
CA 1:VAL16 4.7 17.2 1.0
C2' 1:T44128 4.7 35.0 0.1
N 1:VAL16 4.9 17.9 1.0
O 1:HOH250 5.0 20.9 0.7

Iodine binding site 5 out of 8 in 1eta

Go back to Iodine Binding Sites List in 1eta
Iodine binding site 5 out of 8 in the The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
2:I129

b:39.4
occ:0.13
 I3 2:T44129 0.0 39.4 0.1
C3 2:T44129 2.0 35.0 0.1
C2 2:T44129 2.9 35.0 0.1
C4 2:T44129 2.9 35.0 0.1
O4 2:T44129 3.2 35.0 0.1
C1' 2:T44129 3.5 35.0 0.1
CD1 2:LEU17 3.8 21.3 1.0
C6' 2:T44129 3.9 35.0 0.1
C2' 2:T44129 4.0 35.0 0.1
C5 2:T44129 4.2 35.0 0.1
C1 2:T44129 4.2 35.0 0.1
C6 2:T44129 4.7 35.0 0.1
C5' 2:T44129 4.7 35.0 0.1
C3' 2:T44129 4.9 35.0 0.1
CG 2:LEU17 4.9 20.6 1.0
CD2 2:LEU17 5.0 20.7 1.0

Iodine binding site 6 out of 8 in 1eta

Go back to Iodine Binding Sites List in 1eta
Iodine binding site 6 out of 8 in the The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
2:I129

b:32.4
occ:0.13
 I3' 2:T44129 0.0 32.4 0.1
C3' 2:T44129 2.1 35.0 0.1
C2' 2:T44129 2.9 35.0 0.1
C4' 2:T44129 3.0 35.0 0.1
O4' 2:T44129 3.3 35.0 0.1
C1' 2:T44129 4.3 35.0 0.1
C5' 2:T44129 4.3 35.0 0.1
C6' 2:T44129 4.7 35.0 0.1

Iodine binding site 7 out of 8 in 1eta

Go back to Iodine Binding Sites List in 1eta
Iodine binding site 7 out of 8 in the The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
2:I129

b:39.4
occ:0.13
 I5 2:T44129 0.0 39.4 0.1
C5 2:T44129 2.0 35.0 0.1
C4 2:T44129 2.9 35.0 0.1
C6 2:T44129 3.0 35.0 0.1
O4 2:T44129 3.1 35.0 0.1
C1' 2:T44129 3.8 35.0 0.1
C6' 2:T44129 4.0 35.0 0.1
CG2 2:THR106 4.0 25.3 1.0
C3 2:T44129 4.1 35.0 0.1
C1 2:T44129 4.3 35.0 0.1
CB 2:ALA108 4.5 22.0 1.0
C2 2:T44129 4.7 35.0 0.1
CD 2:LYS15 4.8 26.9 1.0
CG2 2:VAL121 4.8 26.1 1.0
C2' 2:T44129 4.9 35.0 0.1
CB 2:LYS15 4.9 23.8 1.0

Iodine binding site 8 out of 8 in 1eta

Go back to Iodine Binding Sites List in 1eta
Iodine binding site 8 out of 8 in the The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val 30-->Met Variant to 1.7 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
2:I129

b:29.7
occ:0.13
 I5' 2:T44129 0.0 29.7 0.1
C5' 2:T44129 2.1 35.0 0.1
C6' 2:T44129 2.9 35.0 0.1
C4' 2:T44129 3.0 35.0 0.1
O 2:ALA109 3.1 19.4 1.0
CD1 2:LEU17 3.3 21.3 1.0
O4' 2:T44129 3.3 35.0 0.1
CG 2:LEU17 3.3 20.6 1.0
C 2:ALA109 3.6 19.3 1.0
CB 2:ALA108 3.6 22.0 1.0
N 2:ALA109 3.7 21.1 1.0
CB 2:LEU17 3.7 20.8 1.0
N 2:LEU110 4.1 17.9 1.0
C 2:ALA108 4.1 21.7 1.0
O 2:LYS15 4.1 22.9 1.0
N 2:LEU17 4.2 20.2 1.0
CA 2:ALA108 4.2 22.1 1.0
C1' 2:T44129 4.3 35.0 0.1
C3' 2:T44129 4.3 35.0 0.1
CA 2:ALA109 4.3 20.0 1.0
CA 2:LEU110 4.4 16.6 1.0
CB 2:LEU110 4.4 16.1 1.0
CG 2:LYS15 4.6 25.8 1.0
CA 2:LEU17 4.6 19.7 1.0
C 2:LYS15 4.7 22.4 1.0
CD2 2:LEU17 4.7 20.7 1.0
C2' 2:T44129 4.8 35.0 0.1
C 2:VAL16 4.8 20.7 1.0
CA 2:VAL16 4.9 20.8 1.0
O 2:HOH239 4.9 26.9 0.4
CD1 2:LEU110 4.9 15.4 1.0
O 2:ALA108 5.0 22.4 1.0

Reference:

J.A.Hamilton, L.K.Steinrauf, B.C.Braden, J.Liepnieks, M.D.Benson, G.Holmgren, O.Sandgren, L.Steen. The X-Ray Crystal Structure Refinements of Normal Human Transthyretin and the Amyloidogenic Val-30-->Met Variant to 1.7-A Resolution. J.Biol.Chem. V. 268 2416 1993.
ISSN: ISSN 0021-9258
PubMed: 8428915
Page generated: Sun Aug 11 09:34:51 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy