Iodine in PDB 2y1b: Crystal Structure of the E. Coli Outer Membrane Lipoprotein Rcsf

The structure of Crystal Structure of the E. Coli Outer Membrane Lipoprotein Rcsf, PDB code: 2y1b was solved by J.P.Declercq, P.Leverrier, A.Boujtat, J.F.Collet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.25 / 2.00
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	55.714, 55.714, 61.679, 90.00, 90.00, 120.00
R / Rfree (%)	19.6 / 25.8

The binding sites of Iodine atom in the Crystal Structure of the E. Coli Outer Membrane Lipoprotein Rcsf (pdb code 2y1b). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 3 binding sites of Iodine where determined in the Crystal Structure of the E. Coli Outer Membrane Lipoprotein Rcsf, PDB code: 2y1b:
Jump to Iodine binding site number: 1; 2; 3;

Iodine binding site 1 out of 3 in the Crystal Structure of the E. Coli Outer Membrane Lipoprotein Rcsf


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of the E. Coli Outer Membrane Lipoprotein Rcsf within 5.0Å range: probe atom residue distance (Å) B Occ A:I1133 b:34.6 occ:1.00 I3 A:I3C1133 0.0 34.6 1.0 C6 A:I3C1133 2.1 31.4 1.0 C5 A:I3C1133 3.0 33.9 1.0 C1 A:I3C1133 3.0 32.7 1.0 N13 A:I3C1133 3.1 31.1 1.0 C7 A:I3C1133 3.3 34.8 1.0 O8 A:I3C1133 3.5 34.7 1.0 CD2 A:HIS107 3.7 20.9 1.0 O9 A:I3C1133 3.9 34.8 1.0 CG A:HIS107 4.0 20.3 1.0 CB A:HIS107 4.2 21.6 1.0 C4 A:I3C1133 4.2 35.5 1.0 C2 A:I3C1133 4.3 32.2 1.0 CD1 A:ILE125 4.3 24.8 1.0 NE2 A:HIS107 4.4 19.0 1.0 OE1 A:GLU68 4.7 29.2 1.0 ND1 A:HIS107 4.7 19.8 1.0 C3 A:I3C1133 4.8 33.4 1.0 CE1 A:HIS107 4.9 20.6 1.0

Iodine binding site 2 out of 3 in the Crystal Structure of the E. Coli Outer Membrane Lipoprotein Rcsf


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of the E. Coli Outer Membrane Lipoprotein Rcsf within 5.0Å range: probe atom residue distance (Å) B Occ A:I1133 b:42.4 occ:1.00 I2 A:I3C1133 0.0 42.4 1.0 C4 A:I3C1133 2.1 35.5 1.0 C3 A:I3C1133 3.0 33.4 1.0 C5 A:I3C1133 3.1 33.9 1.0 C10 A:I3C1133 3.2 32.6 1.0 N13 A:I3C1133 3.3 31.1 1.0 O12 A:I3C1133 3.4 34.6 1.0 O11 A:I3C1133 3.9 35.3 1.0 CB A:SER108 4.1 26.2 1.0 OG A:SER108 4.2 33.6 1.0 C2 A:I3C1133 4.4 32.2 1.0 C6 A:I3C1133 4.4 31.4 1.0 O A:HOH2044 4.6 36.9 1.0 O A:HIS107 4.7 21.9 1.0 C1 A:I3C1133 4.9 32.7 1.0

Iodine binding site 3 out of 3 in the Crystal Structure of the E. Coli Outer Membrane Lipoprotein Rcsf


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of the E. Coli Outer Membrane Lipoprotein Rcsf within 5.0Å range: probe atom residue distance (Å) B Occ A:I1133 b:32.2 occ:1.00 I1 A:I3C1133 0.0 32.2 1.0 C2 A:I3C1133 2.1 32.2 1.0 C1 A:I3C1133 3.0 32.7 1.0 C3 A:I3C1133 3.0 33.4 1.0 C10 A:I3C1133 3.2 32.6 1.0 C7 A:I3C1133 3.2 34.8 1.0 O11 A:I3C1133 3.4 35.3 1.0 O9 A:I3C1133 3.5 34.8 1.0 O12 A:I3C1133 3.7 34.6 1.0 O8 A:I3C1133 3.7 34.7 1.0 O A:HOH2044 4.3 36.9 1.0 O A:HOH2037 4.3 29.7 1.0 C6 A:I3C1133 4.3 31.4 1.0 C4 A:I3C1133 4.3 35.5 1.0 O A:HOH2043 4.6 22.7 1.0 C5 A:I3C1133 4.9 33.9 1.0

P.Leverrier, J.P.Declercq, K.Denoncin, D.Vertommen, A.Hiniker, S.H.Cho, J.F.Collet. Crystal Structure of the Outer Membrane Protein Rcsf, A New Substrate For the Periplasmic Protein- Disulfide Isomerase Dsbc. J.Biol.Chem. V. 286 16734 2011.
ISSN: ISSN 0021-9258
PubMed: 21454485
DOI: 10.1074/JBC.M111.224865