Atomistry » Iodine » PDB 4dgh-4hjh » 4e27
Atomistry »
  Iodine »
    PDB 4dgh-4hjh »
      4e27 »

Iodine in PDB 4e27: Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing

Protein crystallography data

The structure of Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing, PDB code: 4e27 was solved by T.K.Craig, J.Abendroth, D.Lorimer, A.B.Burgin Jr, A.Segall, F.Rohwer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.51 / 2.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 135.710, 68.360, 107.830, 90.00, 93.69, 90.00
R / Rfree (%) 20.2 / 25.6

Other elements in 4e27:

The structure of Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing also contains other interesting chemical elements:

Sodium (Na) 1 atom

Iodine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iodine atom in the Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing (pdb code 4e27). This binding sites where shown within 5.0 Angstroms radius around Iodine atom.
In total 28 binding sites of Iodine where determined in the Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing, PDB code: 4e27:
Jump to Iodine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iodine binding site 1 out of 28 in 4e27

Go back to Iodine Binding Sites List in 4e27
Iodine binding site 1 out of 28 in the Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 1 of Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I201

b:37.4
occ:1.00
N A:ALA144 3.6 21.7 1.0
CG2 A:VAL169 4.0 16.8 1.0
CB A:VAL143 4.0 14.4 1.0
CA A:VAL143 4.1 21.4 1.0
CG A:PRO82 4.1 20.8 1.0
CB A:ALA144 4.2 18.8 1.0
CB A:PRO82 4.2 21.2 1.0
CG1 A:VAL169 4.3 9.8 1.0
CG1 A:VAL143 4.4 15.2 1.0
C A:VAL143 4.4 21.5 1.0
CA A:ALA144 4.5 19.9 1.0
CB A:VAL169 4.6 14.9 1.0

Iodine binding site 2 out of 28 in 4e27

Go back to Iodine Binding Sites List in 4e27
Iodine binding site 2 out of 28 in the Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 2 of Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I202

b:31.4
occ:1.00
O E:HOH301 3.2 6.1 1.0
O B:HOH382 3.3 27.1 1.0
O D:HOH315 3.3 14.5 1.0
O A:HOH334 3.3 10.7 1.0
O C:HOH352 3.4 21.3 1.0
O D:HOH391 3.8 22.2 1.0
NE2 C:GLN130 4.0 10.7 1.0
CG D:GLN130 4.0 8.5 1.0
CG B:GLN130 4.1 4.4 1.0
CG C:GLN130 4.1 9.5 1.0
CG E:GLN130 4.2 9.0 1.0
NE2 B:GLN130 4.2 10.7 1.0
CG A:GLN130 4.2 12.3 1.0
NE2 D:GLN130 4.2 14.0 1.0
NE2 A:GLN130 4.3 13.2 1.0
CD C:GLN130 4.4 11.3 1.0
CD D:GLN130 4.4 13.1 1.0
NE2 E:GLN130 4.5 6.5 1.0
CD B:GLN130 4.5 8.9 1.0
CD A:GLN130 4.6 15.8 1.0
CD E:GLN130 4.6 11.5 1.0

Iodine binding site 3 out of 28 in 4e27

Go back to Iodine Binding Sites List in 4e27
Iodine binding site 3 out of 28 in the Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 3 of Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I203

b:47.5
occ:1.00
O A:GLN53 3.2 38.4 1.0
N A:GLU55 3.6 17.8 1.0
C A:GLN53 3.7 33.9 1.0
NH1 E:ARG54 3.7 18.5 1.0
C A:ARG54 3.7 18.0 1.0
CA A:ARG54 4.0 20.3 1.0
O A:HOH342 4.0 24.0 1.0
CA A:GLU55 4.0 20.3 1.0
N A:ARG54 4.0 25.7 1.0
O A:ARG54 4.2 19.2 1.0
CD1 A:LEU173 4.2 21.5 1.0
CA A:GLN53 4.5 38.6 1.0
CB A:GLN58 4.5 12.7 1.0
O A:ALA52 4.6 51.0 1.0
CD E:ARG54 4.7 17.1 1.0
CB A:GLU55 4.7 22.3 1.0
CZ E:ARG54 4.9 19.9 1.0
CG A:GLN58 4.9 13.5 1.0

Iodine binding site 4 out of 28 in 4e27

Go back to Iodine Binding Sites List in 4e27
Iodine binding site 4 out of 28 in the Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 4 of Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I204

b:75.5
occ:1.00
O A:LEU63 3.7 10.7 1.0
CG2 C:THR111 3.8 11.0 1.0
OG1 C:THR111 4.0 21.4 1.0
CB C:THR111 4.0 15.4 1.0
NZ C:LYS113 4.1 6.5 1.0
O A:HOH384 4.1 24.2 1.0
O C:HOH379 4.1 34.6 1.0
CA A:ILE64 4.2 15.7 1.0
CG A:LEU63 4.2 15.1 1.0
CG1 A:ILE64 4.2 13.6 1.0
C A:LEU63 4.3 12.8 1.0
CE C:LYS113 4.3 7.5 1.0
O C:HOH370 4.5 16.9 1.0
N A:ILE64 4.6 14.4 1.0
CD1 A:LEU63 4.7 17.0 1.0
CB A:ILE64 4.8 15.4 1.0
CD2 A:LEU63 4.9 16.1 1.0

Iodine binding site 5 out of 28 in 4e27

Go back to Iodine Binding Sites List in 4e27
Iodine binding site 5 out of 28 in the Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 5 of Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I205

b:83.5
occ:1.00
O E:HOH356 2.8 3.9 1.0
CA A:GLY125 3.9 8.2 1.0
O A:HOH405 4.3 30.0 1.0
C A:GLY125 4.3 9.3 1.0
O A:GLY125 4.5 6.0 1.0
O E:HOH328 4.7 11.5 1.0
N A:GLY125 4.8 9.7 1.0
N A:THR126 5.0 10.9 1.0

Iodine binding site 6 out of 28 in 4e27

Go back to Iodine Binding Sites List in 4e27
Iodine binding site 6 out of 28 in the Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 6 of Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I206

b:0.6
occ:1.00
C A:PHE5 3.4 61.0 1.0
O A:PHE5 3.6 61.5 1.0
N A:ARG6 3.7 62.6 1.0
CA A:PHE5 3.8 60.0 1.0
OG A:SER33 3.9 48.7 1.0
CB A:ARG6 4.2 64.9 1.0
N A:PHE5 4.2 59.5 1.0
CA A:ARG6 4.3 64.2 1.0
O A:GLN4 4.4 60.6 1.0
C A:GLN4 4.5 59.1 1.0
CB A:SER33 4.9 47.6 1.0

Iodine binding site 7 out of 28 in 4e27

Go back to Iodine Binding Sites List in 4e27
Iodine binding site 7 out of 28 in the Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 7 of Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I207

b:90.6
occ:1.00
O A:HOH379 3.4 16.6 1.0
N A:GLY99 3.6 12.2 1.0
N A:ALA100 3.8 12.1 1.0
OG A:SER98 3.8 14.2 1.0
CA A:GLY99 3.9 12.4 1.0
O A:HOH306 3.9 11.4 1.0
C A:GLY99 4.0 13.3 1.0
CB A:ALA100 4.3 9.3 1.0
NH2 A:ARG94 4.3 16.6 1.0
CA A:ALA100 4.5 12.8 1.0
C A:SER98 4.7 12.0 1.0
O C:HOH365 4.7 32.2 1.0
ND2 A:ASN154 4.8 22.6 1.0
O A:GLY99 4.8 12.9 1.0
CA A:SER98 5.0 15.7 1.0
CB A:SER98 5.0 15.1 1.0

Iodine binding site 8 out of 28 in 4e27

Go back to Iodine Binding Sites List in 4e27
Iodine binding site 8 out of 28 in the Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 8 of Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing within 5.0Å range:
probe atom residue distance (Å) B Occ
A:I208

b:20.0
occ:1.00
NZ C:LYS141 3.3 21.1 1.0
CB A:ALA52 3.5 46.4 1.0
CZ C:PHE84 4.0 4.7 1.0
CD A:PRO176 4.1 22.9 1.0
CG A:PRO176 4.1 21.8 1.0
N A:ALA52 4.2 52.0 1.0
C A:GLY51 4.2 53.2 1.0
O A:GLY51 4.4 53.7 1.0
CE C:LYS141 4.4 19.1 1.0
CA A:ALA52 4.4 47.6 1.0
CB A:ASN175 4.5 20.0 1.0
O A:PRO176 4.5 23.2 1.0
O C:VAL169 4.6 21.8 1.0
CE1 C:PHE84 4.7 7.7 1.0
CA A:GLY51 4.7 55.1 1.0
CD C:LYS141 4.7 18.3 1.0
N A:PRO176 4.8 23.6 1.0
CE2 C:PHE84 5.0 4.1 1.0

Iodine binding site 9 out of 28 in 4e27

Go back to Iodine Binding Sites List in 4e27
Iodine binding site 9 out of 28 in the Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 9 of Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I201

b:40.2
occ:1.00
N B:ALA144 3.4 20.8 1.0
CB B:ALA144 3.9 21.4 1.0
CB B:VAL143 4.1 15.4 1.0
CG2 B:VAL169 4.1 30.3 1.0
CA B:ALA144 4.2 21.6 1.0
CA B:VAL143 4.2 16.3 1.0
CG B:PRO82 4.3 16.2 1.0
C B:VAL143 4.3 20.3 1.0
CB B:PRO82 4.3 16.8 1.0
CG1 B:VAL143 4.5 14.5 1.0
CG1 B:VAL169 4.5 29.4 1.0
CB B:VAL169 4.8 31.3 1.0

Iodine binding site 10 out of 28 in 4e27

Go back to Iodine Binding Sites List in 4e27
Iodine binding site 10 out of 28 in the Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing


Mono view


Stereo pair view

A full contact list of Iodine with other atoms in the I binding site number 10 of Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing within 5.0Å range:
probe atom residue distance (Å) B Occ
B:I202

b:73.0
occ:1.00
CB B:GLN53 3.9 20.0 1.0
CA B:GLN58 4.0 18.4 1.0
CD B:PRO176 4.0 19.6 1.0
N B:GLN58 4.1 18.6 1.0
C B:LEU57 4.4 20.6 1.0
CG B:PRO176 4.4 17.1 1.0
CB B:GLN58 4.4 16.4 1.0
O B:LEU57 4.5 21.8 1.0
CB B:LEU57 4.5 17.7 1.0
CZ E:PHE84 4.5 19.6 1.0
CA B:GLN53 4.5 30.0 1.0
O E:HOH367 4.7 34.2 1.0
OD1 B:ASN175 4.7 32.2 1.0
CG B:GLN58 4.8 17.8 1.0
CE2 E:PHE84 4.9 18.6 1.0

Reference:

T.K.Craig, J.Abendroth, D.Lorimer, A.B.Burgin Jr, A.Segall, F.Rohwer. Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences Solved By Iodide Sad Phasing To Be Published.
Page generated: Sun Aug 11 17:36:31 2024

Last articles

Cl in 2QEI
Cl in 2QEP
Cl in 2QE5
Cl in 2QE3
Cl in 2QDY
Cl in 2QE2
Cl in 2QAA
Cl in 2QD8
Cl in 2QD6
Cl in 2QD4
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy